Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47840 699 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 423 / 8e-134 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 424 / 4e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 413 / 6e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 409 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 398 / 2e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 390 / 5e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 388 / 3e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 387 / 3e-120 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 387 / 4e-120 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032091 [exp] 422 / 4e-134 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 419 / 4e-133 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 417 / 1e-132 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 417 / 2e-130 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 417 / 3e-130 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 418 / 7e-130 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 410 / 1e-129 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 397 / 3e-124 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017032 [exp] 394 / 1e-123 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021700 [exp] 914 / 0 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 450 / 6e-144 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 441 / 1e-139 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 442 / 1e-138 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 434 / 3e-138 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 434 / 1e-137 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 426 / 2e-135 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 427 / 8e-135 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 417 / 6e-130 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G076100 [exp] 398 / 1e-127 AT4G33170 383 / 1e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019098 pacid=23141754 polypeptide=Lus10019098 locus=Lus10019098.g ID=Lus10019098.BGIv1.0 annot-version=v1.0 ATGTTTGGAGTGAGGAAAACGTTGGCCTTCTGTCAAAGGAGGGTTCACATGTTGTCCCATGGTGATGGCCCATCGGAGGCATTGAGAAGGAGGGTGGCTG AGTTGGAGAAGTCGAGGAAAAGGAAGAACCCCAAGAAGCATGAATTTTTTGTTGAAGTTCCCGAGTCTTTGAAGTTCCTTGACACTGCAACTATGCCAAT GATCCTCACTGTTGTTGGTACTGCTCTAATCGCGAAACTCCTGATGATGTACGATCAGTCGAAATCAGAAGAAACCATTGAGCGCAAAATACAGGAAGCT CCAGCAGGTCAAGGTACTGTTAGGATGCTTAGTCGCGAGGAATGGGAGGAAATTCGAGATGTGAGGCCTAGAACTCCATTTGAATCTAAGCTTGCTCGAC CAAGAGCTCGAATAAGAACTGATGATCCAATTAGCTTGATGCTAAAGCTCGGCTTTCGGGTTCGTTTTCATAGTAGAAAGCTATCCTCTGTCTCAGCCAC TGCTCGAGTAGACTCTCAAGACTTTCCCGTTGGATATTCAACGCCGGTTGATGTATATTCCAGAGCCGACCTCCAAAGTAGTACTGTAAACATGGTGGAA ATCAACTCTCAGCTGAAGCTGCTTGTCAAGACTGACCGTTTAACGGATGCTCGGGAAATGTTTGACAATATGCCTTGCAGAGATGAGATTTCGTGGACGA CGCTTATATCTGGTTATGTGAGTGCCCTGAACAGTGCGGAAGCGTTGTCATTGTTTTCGAGAATGTGGATTGAGCCGTTGCTCGAAATGGATCCCTTCGT TATAAGTATTGCACTGAAAGCTTGTGGACGGAGTTCAAGTGTTCGATTTGGCGAGTTGTTGCATGCTTACTCAATCAAAACTGATTTCGTTAGCTCGGTT TTCGTCGGGAGTGCTCTCTTGGATCTAAATGTGGTTACTTGGACTGCTATTATAACTGGACTTGTTCGCACCGGTTATTATAAGGAGGGACTGATTTACT TCTCAGAAATGTGGAGATCAAAGGTTGTTTGTGATTCATACACTTTTGCAATTGCATTGAAGGCCTGTGCGGATTTGGGTGCTTTGGATTGTGGAAAGGA GATTCATTGTCAAACGATAAAGAAAGGATTCCATGTCTCCTCGTTTGTGGCCAATACTCTGACTGTTATGTATAACAAGTGCGGTAAGATGAGATATGGT TCACGTTTATTTGAGCAGATGGAGTTGAAAGATGTCGTTTCATGGACATCAACTATTTCTACATATTCTCAGAATGCTGATCATGAAAATGCTATCACAG CTTTTAGAAAAATGTGCGGAACTGGTGTTTGTCCAAATGAATACACTTTTGCAGCAGTTATCACCTCCTGTGCTAATCTTAGTAGCCTTCGGTGGGGTGA ACAATTACATGCTCACGTTTTCCGCCTCGGCTTTGTTGACTATTTATCAGTAGCCAATTCCATCATTACAATGTATTCTAGATGTGGACAGCTTGATGCA GCTTCCAATATTTTTCAGAGGATGAGTAGAAGAGACATCATTTCATGGAGCACTATTATTGGAGAATACTCTCAAGGAGGTTGTGGAGAAAAAGTTTTTG AGTACTTATCCAAGATGAGAAAGGAAGGCCCGCAACCGAATGAGTTTGCTCTTGCTAGCGTGCTAAGTGTTTGTGGAAACTTGGCCACCCTTGAGCAAGG ACTGCAACTTCATGCTCACACACTTCGCATTGGTCTGGAACAGGATGCTATGGTACAAAGTGCACTAATTAATATGTATTCCAAGTGTGGTGGTATACTA GAAGCTTCTAAGGTGTTTTACGAGGCAAAAAATGACTGCCTCGTTTCTTGGACATCGATGATCAACGGTTATGCCGAGCATGGATTGAGCAAGAAAGCAA TTAATTTGTTTGAAAAAATCCGCAAATTAGGTGAAAAACCGGATTCAGTGATATTTATTGGTGTTCTTACAGCTTGCAGTCATGTTGGACTAGTCGACCT TGGTTTTCACTACTTCAACTTGATGAATAGCGAATATAAGATTCGTCCTTCTAAAGAGCATTATGGATGTATGATTGATCTCCTTTGTCGAGCTGGAAGA TTAAGTGATGCTGAGGACATGATTAAAACCATGCCATTTCAGCAGGGTTATGTTGTTTGGTCAACTCTTCTCAGAGCATGCAGGGTCCATGGAGATGTGG ATCGTGGTAAACGTATTGCCCAGAAGATTCTAGAAATGGATCCTAATTGTGCTGGCACCCATGTTACCCTTGCTAACTTGTATGCTGCCAAAGGAAAGTG GAAGGAAGTAGCAGAAGTAAGGAAAATGCTGAAATGGAAGGGCATAACTAAGGAGACTGGATCATCATGGATAAAAATGAGGGATGAGGTGTCTACATTC ACATCTGGAGATTACTCTCATGCACGGGCAAATGATATATACAATGTATTAGAGCTGCTGTCCATAAGAGAGGATGATGATGACATTTGGATAGATTATG ATTCGATCGATGTTGAGAGGCTAATGTCCAGTTCTGATCGTGTATCAAATGTTCCTGAATCATTGAAGTGCCTTGACACTGTAACTATGCCAATGATTCT TACTGTTGTCACTCATTTCGAAGCTCCTGATGATGCAAGCTCCTGCAAGTCAGAGAGCTCGAAATGGGATGAAATTCAAGAAGTGAGGCCTAGAACTCCA TTTGAATCTAAGCTGACGCGACCGAGAGCTCGAATAAGAACAGATGATCCAATTAGTGTGAAAGATTGCAGCATGGACGAAATCCAGGAAAGATTAGAAG CACTGCCGGACTACCGATTTTCGGAAAGATGGGTTCCCCCCTACGTTGAAGAAAGCGCCATGAACTGCTGCTCCTGA
AA sequence Show only first row Show all	>Lus10019098 pacid=23141754 polypeptide=Lus10019098 locus=Lus10019098.g ID=Lus10019098.BGIv1.0 annot-version=v1.0 MFGVRKTLAFCQRRVHMLSHGDGPSEALRRRVAELEKSRKRKNPKKHEFFVEVPESLKFLDTATMPMILTVVGTALIAKLLMMYDQSKSEETIERKIQEA PAGQGTVRMLSREEWEEIRDVRPRTPFESKLARPRARIRTDDPISLMLKLGFRVRFHSRKLSSVSATARVDSQDFPVGYSTPVDVYSRADLQSSTVNMVE INSQLKLLVKTDRLTDAREMFDNMPCRDEISWTTLISGYVSALNSAEALSLFSRMWIEPLLEMDPFVISIALKACGRSSSVRFGELLHAYSIKTDFVSSV FVGSALLDLNVVTWTAIITGLVRTGYYKEGLIYFSEMWRSKVVCDSYTFAIALKACADLGALDCGKEIHCQTIKKGFHVSSFVANTLTVMYNKCGKMRYG SRLFEQMELKDVVSWTSTISTYSQNADHENAITAFRKMCGTGVCPNEYTFAAVITSCANLSSLRWGEQLHAHVFRLGFVDYLSVANSIITMYSRCGQLDA ASNIFQRMSRRDIISWSTIIGEYSQGGCGEKVFEYLSKMRKEGPQPNEFALASVLSVCGNLATLEQGLQLHAHTLRIGLEQDAMVQSALINMYSKCGGIL EASKVFYEAKNDCLVSWTSMINGYAEHGLSKKAINLFEKIRKLGEKPDSVIFIGVLTACSHVGLVDLGFHYFNLMNSEYKIRPSKEHYGCMIDLLCRAGR LSDAEDMIKTMPFQQGYVVWSTLLRACRVHGDVDRGKRIAQKILEMDPNCAGTHVTLANLYAAKGKWKEVAEVRKMLKWKGITKETGSSWIKMRDEVSTF TSGDYSHARANDIYNVLELLSIREDDDDIWIDYDSIDVERLMSSSDRVSNVPESLKCLDTVTMPMILTVVTHFEAPDDASSCKSESSKWDEIQEVRPRTP FESKLTRPRARIRTDDPISVKDCSMDEIQERLEALPDYRFSERWVPPYVEESAMNCCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47840			Tetratricopeptide repeat (TPR)...		Lus10019098 [exp]	0	1
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	1.4	0.6793
AT5G35910			Polynucleotidyl transferase, r...		Lus10020293 [exp]	2.8	0.6620
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10042811 [exp]	8.5	0.7314
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	11.0	0.6786
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10037023 [exp]	11.6	0.6601
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	19.4	0.6516
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	33.5	0.6113
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	53.2	0.6333
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	58.0	0.6245
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	67.2	0.6287

Compare expression of checked genes

Lus10019098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.