Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78060 991 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 766 / 0 Glycosyl hydrolase family protein (.1) AT3G19620 762 / 0 Glycosyl hydrolase family protein (.1) AT1G02640 740 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G09730 732 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G49360 726 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G64570 726 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09700 434 / 3e-144 Glycosyl hydrolase family protein (.1) AT3G47000 141 / 5e-35 Glycosyl hydrolase family protein (.1) AT3G47050 139 / 3e-34 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022374 [exp] 1035 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 752 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010015 [exp] 724 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 721 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10007775 [exp] 706 / 0 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 636 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019240 [exp] 285 / 6e-87 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 139 / 7e-38 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10010657 [exp] 149 / 2e-37 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093900 [exp] 1127 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 1060 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G094000 [exp] 1055 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 984 / 0 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G089100 [exp] 768 / 0 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G294700 [exp] 767 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G197200 [exp] 757 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.001G206800 [exp] 754 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.010G141400 [exp] 752 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.014G122200 [exp] 751 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019099 pacid=23141714 polypeptide=Lus10019099 locus=Lus10019099.g ID=Lus10019099.BGIv1.0 annot-version=v1.0 ATGAAACTCTCCATTTCTGCACAGCTACTCTACTACATGCTCCTATTGTCTACAGTGGCAGATTCAGCACTCGTTCATCAGCAGCAGCAGCAGCCTCCAT TTTCCTGCTCATCCATAAACAAATACCCATTCTGCCAAACCAAACTCCCCATATCCCAAAGAGCTAAAGACCTCGTCTTCAGATTGACACTGGACGAGAA GATATCTCAGCTGGTGAACACAGCTCCTTCAATCCCACGCTTGGGGATCCCTGCCTACCAATGGTGGTCCGAGGCTCTCCACGGCGTAGCTTTCATCTCA AGTGTTCCCCAGGGGATCCATTTCAACGGATCAATCAAAGCTGCAACCAGCTTCCCTCAAGTCATCCTCTCCGCCTCCTCCTTCGACCCTCTCCTTTGGT ACCGCATTGGCCAAGCTGTAGGGAAAGAGGCGAGAGCTATATACAATGCAGGGCAAGCAACGGGGATGACGTTTTGGGCGCCCAATATCAATATATATAG AGACCCAAGATGGGGGAGAGGGCAAGAGACTCCTGGAGAAGACCCTGCTTTGACTTCCAAATATGCTGTCTCTTATGTTAGAGGGGTTCAAGGAGATGCC TTTAATGGCTCTTCATCAGACCATCAACTTCAGGCTTCTGCTTGCTGCAAACATTTCACTGCCTATGATTTGGATCACTGGAATGGCATCGACCGCTTCG TCTTTGATGCCAAAGTAACGGCGCAGGACCTAGCAGACACATTCCAGCCACCTTTCTACAGCTGCATCAAAGAAGGAAAAGCTAGTGGGATAATGTGTGC TTATAATAAAGTAAATGGAGTCCCTAATTGTGCAGATTATGATCTTCTTTCCAATACAGCAAGGGGGAAGTGGCGCTTCAATGGGTACATAACTTCAGAT TGTGATGCAGTATCCATCATGTTTGAAAATCAGACTTATGCCAAAACACCAGAAGATGCAGCTGCGGCCGTGCTCAAAGCTGGAATGGATGTGAACTGCG GTGACTACCTGATGAAGTACACAAAATCTGCAGTGCGAAAGAAGAAAGTGATGGAATCAGATATAGACCGAGCCCTTCAGAATCTCTTCTCAGTAAGGAT GAGACTAGGACTGTTCAACGGCGATCCAACTAAACAGCCTTACGGTAATATTGGTCCAGAACAAGCATGTTCCAAAGAGCACCAGGATCTAGCACTTGAA GCAGCACTCCACGGCATTGTGCTCCTCAAGAACTCCCACCACTTACTCCCTCTTGCAAAATCCAAAACCCTCTCACTAGCAGTAATAGGTCCCAACGCTG ATGTCGCCAAGACTCTTCTAGGAAACTATGCAGGCCCTCCTTGTAAAACCGTCACACCATTGCAAGGTCTCCAAAGCTACGTCAGCAGCAAGAGAATAAT GTATCATCCTGGTTGCGTCTCAGTTGATGAGTGTTCCTCGGCGAGTATTGACCAGGCGGTCAATGTTGCGAAAGGGGCTGACCAAGTGGTGTTGGTTATG GGACTGGATCAAACTCAAGAGAGAGAGGATCATGACCGTGATCATCTGCTTCTCCCCGGTAACCAGCAGAAGCTGATCACAAGAGTTGCTAGTGCTGCTA AGAAACCGGTTGTTTTGGTTCTCCTTTGCGGTGGTCCGGTGGATGTGAGCTTTGCTAAGTATGATAACAACATTGGAAGCATTTTGTGGGCTGGTTATCC AGGTCAAGCGGGAGGACTCGCGCTTGCACAGATCATCTTCGGCGACCACAACCCAGGAGGAAGATTACCAGTGACATGGTATCCAAAAGAATTCAACAAA GTGCCGATGACAGACATGAGGATGCGGTCAGATCCGTCATCAGGCTATCCTGGCCGAACATACAGATTTTACACCGGACCAAAAGTGTTCGAATTTGGTT ACGGCCTCAGCTACTCCAACTACTCGTATCAAATTGTTGTTCCAGTCTCCTCAAGCAAAGTCAACTTCAGGTCATCAACAGTAAGCACAAGGTCAGAAGA CTACAACAGTCAGGTGTTATTGTCTGAAATAGACAGACAAGTCTGCGAAAAGAACGAGTTTTCTGTTACTGTAAGAGTTCAGAATCAAGGGGATATGGCT GGTAAGCATCCAGTGCTGCTATTTGTGAGAGGGTCAAAGGACATTATTCAAGATGGGAGACCATTGAAGAAACTAGTTGGATTCGAAACTTTGTACCTGA ATCCAGGGGGCACCAAAGATATTGAATATAAGTTGAGCCCTTGTAAGCATTTCAGCACAGCTAATGAACAAGGTATGCTGGTGATGGAACAAGGCTCCCG TTTCTTGGTTGTTGGCGATGAAGAGTACCTAATCAATGTCATAGTCTAA
AA sequence Show only first row Show all	>Lus10019099 pacid=23141714 polypeptide=Lus10019099 locus=Lus10019099.g ID=Lus10019099.BGIv1.0 annot-version=v1.0 MKLSISAQLLYYMLLLSTVADSALVHQQQQQPPFSCSSINKYPFCQTKLPISQRAKDLVFRLTLDEKISQLVNTAPSIPRLGIPAYQWWSEALHGVAFIS SVPQGIHFNGSIKAATSFPQVILSASSFDPLLWYRIGQAVGKEARAIYNAGQATGMTFWAPNINIYRDPRWGRGQETPGEDPALTSKYAVSYVRGVQGDA FNGSSSDHQLQASACCKHFTAYDLDHWNGIDRFVFDAKVTAQDLADTFQPPFYSCIKEGKASGIMCAYNKVNGVPNCADYDLLSNTARGKWRFNGYITSD CDAVSIMFENQTYAKTPEDAAAAVLKAGMDVNCGDYLMKYTKSAVRKKKVMESDIDRALQNLFSVRMRLGLFNGDPTKQPYGNIGPEQACSKEHQDLALE AALHGIVLLKNSHHLLPLAKSKTLSLAVIGPNADVAKTLLGNYAGPPCKTVTPLQGLQSYVSSKRIMYHPGCVSVDECSSASIDQAVNVAKGADQVVLVM GLDQTQEREDHDRDHLLLPGNQQKLITRVASAAKKPVVLVLLCGGPVDVSFAKYDNNIGSILWAGYPGQAGGLALAQIIFGDHNPGGRLPVTWYPKEFNK VPMTDMRMRSDPSSGYPGRTYRFYTGPKVFEFGYGLSYSNYSYQIVVPVSSSKVNFRSSTVSTRSEDYNSQVLLSEIDRQVCEKNEFSVTVRVQNQGDMA GKHPVLLFVRGSKDIIQDGRPLKKLVGFETLYLNPGGTKDIEYKLSPCKHFSTANEQGMLVMEQGSRFLVVGDEEYLINVIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78060			Glycosyl hydrolase family prot...		Lus10019099 [exp]	0	1
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	3.0	0.9665
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	4.0	0.9614
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	8.0	0.9578
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	9.9	0.9477
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	9.9	0.9584
AT1G58070			unknown protein		Lus10019953 [exp]	14.5	0.9525
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	14.8	0.9571
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	16.5	0.9348
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	23.0	0.9459
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	27.0	0.9436

Compare expression of checked genes

Lus10019099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.