Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18790 134 / 2e-37 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT5G66990 123 / 3e-33 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT1G74480 123 / 5e-33 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT5G53040 99 / 4e-24 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT4G35590 74 / 1e-14 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT1G64530 60 / 7e-10 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 55 / 3e-08 NLP7 NIN like protein 7 (.1) AT1G76350 49 / 2e-06 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 49 / 4e-06 NLP4 Plant regulator RWP-RK family protein (.1.2) AT3G59580 48 / 7e-06 NLP9 Plant regulator RWP-RK family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034456 [exp] 254 / 6e-83 AT1G18790 157 / 9e-46 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10035008 [exp] 120 / 8e-32 AT1G18790 145 / 6e-42 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10005921 [exp] 98 / 2e-23 AT5G53040 143 / 2e-41 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Lus10004035 [exp] 62 / 9e-11 AT5G16100 68 / 2e-12 unknown protein Lus10014429 [exp] 52 / 2e-07 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10023931 [exp] 52 / 2e-07 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 50 / 1e-06 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 49 / 3e-06 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 49 / 4e-06 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011800 [exp] 100 / 9e-25 AT5G53040 137 / 1e-39 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.012G016800 [exp] 99 / 4e-24 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.005G101000 [exp] 75 / 3e-15 AT4G35590 273 / 5e-90 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) Potri.006G223100 [exp] 56 / 9e-09 AT5G16100 72 / 7e-14 unknown protein Potri.003G143000 [exp] 54 / 8e-08 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 53 / 2e-07 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.009G087500 [exp] 52 / 2e-07 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.002G058800 [exp] 50 / 8e-07 AT1G06500 95 / 4e-24 unknown protein Potri.009G166666 [exp] 50 / 1e-06 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 50 / 2e-06 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Lus10019100 pacid=23141829 polypeptide=Lus10019100 locus=Lus10019100.g ID=Lus10019100.BGIv1.0 annot-version=v1.0 ATGGAGCTTGTTGAGGTGAAACAAGAACAACATCACTTCCAAATCCGGTCACCACCACTTCTCCATGACGATTTCGAACTTCAAGCAACATTCGGAGGAT TCTTCGACGACTTCACTTTCAGCAGCCATGGTGGCGGGGATGACGACTACTACTCATCATCATCCCTTCCTCCATTCCCATCATTCAATCATCTCTTCGA TCTCAATAGTAGCACTAATATTCTTCATCAATCGTCATCTTCATCGATCTCATCATCTTCCTGCTCCTCCCACATCGATCATCATGATCCGGTTCCCAAC GAACTGGGGACACCTAACAAAATAGTTCCGACAAACGGGCAGGTGATCACGAGGGAGATGTTGTCTCGGTATTTCTACATGCCGATAACGGAGGCAGCCA AGGAGATGAACATGGGGCTGACTTTACTGAAGAAGAGATGCAGGGAGCTCGGGGTACGTAGGTGGCCCCACAGGAAGCTGATGAGCTTAAACACTCTTAT ATCGAGTGTCCGCCACCTCCTCCACAACCAACAACAAGGCGACGATGGTCACGAAGGATTAACGAGGTTGGGGAAGTTGGAGGAGTCGGTGAGGGTGCTC GAGCATGAGCGTAGGGTGCTCGAGGAATGTCCTAATTTGCAATTGGAGAGCAATACCAAGAGGCTGAGGCAGGCTTGTTTCAAGGCCAACTACAAGAGGA AGCATAAGCACGGCGTATCGACGAAGATGATTGATCATGGTGATGCATCGGGTCGGAGAGGGCATCGTAGGACCAACGTCGATGTGCAAGATGTTAGTTC TACTACTAATAGTGATGTTGTTGCTAATTTGGGTTGTGAAAATGATGATGATGGGGATGAGGAGATTAGGTCACTTCTTCTTCCGGCGGAGTTTGATTTT GAGTTCTGA
AA sequence Show only first row Show all	>Lus10019100 pacid=23141829 polypeptide=Lus10019100 locus=Lus10019100.g ID=Lus10019100.BGIv1.0 annot-version=v1.0 MELVEVKQEQHHFQIRSPPLLHDDFELQATFGGFFDDFTFSSHGGGDDDYYSSSSLPPFPSFNHLFDLNSSTNILHQSSSSSISSSSCSSHIDHHDPVPN ELGTPNKIVPTNGQVITREMLSRYFYMPITEAAKEMNMGLTLLKKRCRELGVRRWPHRKLMSLNTLISSVRHLLHNQQQGDDGHEGLTRLGKLEESVRVL EHERRVLEECPNLQLESNTKRLRQACFKANYKRKHKHGVSTKMIDHGDASGRRGHRRTNVDVQDVSSTTNSDVVANLGCENDDDGDEEIRSLLLPAEFDF EF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	0	1
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	1.0	1.0000
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	1.4	1.0000
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	2.4	0.9939
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	3.2	0.9703
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	3.5	0.9864
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	3.5	0.9367
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	4.5	0.8316
					Lus10000749 [exp]	4.6	0.9273
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024251 [exp]	5.5	0.8130
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	6.3	0.9248

Compare expression of checked genes

Lus10019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.