Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47550 294 / 1e-99 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT2G02960 278 / 8e-94 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT5G62460 261 / 2e-86 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 223 / 3e-72 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 130 / 2e-36 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 128 / 3e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G02075 110 / 4e-29 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 99 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 55 / 3e-08 RING/U-box superfamily protein (.1.2) AT4G32670 53 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034454 [exp] 550 / 0 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 416 / 1e-147 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 404 / 9e-143 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10037172 [exp] 321 / 1e-110 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 309 / 9e-106 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 308 / 3e-105 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10004058 [exp] 161 / 4e-48 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 159 / 4e-47 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034640 [exp] 131 / 5e-36 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169200 [exp] 329 / 1e-113 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 323 / 2e-111 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 161 / 6e-48 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 159 / 3e-47 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G126600 [exp] 158 / 5e-47 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 157 / 2e-46 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.017G122300 [exp] 154 / 9e-46 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 150 / 7e-44 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 108 / 4e-28 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 100 / 3e-25 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10019102 pacid=23141803 polypeptide=Lus10019102 locus=Lus10019102.g ID=Lus10019102.BGIv1.0 annot-version=v1.0 ATGAGTGATCATCTGGACTCGGGTGTTGATCGTAATATTGCACCTGAGAATGGACAAGTAGGACAAGGTGCTGATGTACTTCCATCTTCTGGGGATTGCT CTTCTTCTCAGCCTGTTGAGAAACCCACTTGTTTTATTGGCATCGAGCGAGAGGGAGAACATGATCTATGCGATGAAAATGAGCCACTTATTCAGACAGT AGAATGCAGAATTTGCCAGGAGGAAGATAGCCTGGTGAATTTGGAGGTTCCATGTGCTTGTAGTGGTAGCTTGAAGTATGCTCATAGGAAATGTGTTCAG CGATGGTGCAACGAAAAAGGAGACATCAATTGTGAGATATGTCGCATGCCTTACCAATCTGGATATACTGCACCACCACCACAGCCAGAAGACTGTGCAA TTGATATGGGCAGTGACGGTTGGACAATTAATGGCGGTCCTTTAGATCTGAACGATCCTAGAATTTTGGCAATGGCTGCTGCTGAACGCCATCTTCTAGA GGCCGAGTATGATGAGTATGCTGATGGTAGTGCAAGCGGGGCTGCGTTTTGTCGTTCTGCTGCTTTAATTCTGATGGCTCTTCTACTGTTGAGGCATGCT ATGTCCATCAACGATTCAGACGGTGATGATGATGTCTCTACAGTTTTCTCCCTTTTCTTGCTTAGAGCTGCTGGCTTTCTTCTGCCATGTTATATAATGG CTTGGGCCATCAGTATCCTTCAACGTAGAAGGCAAAGGCAGGAAGCAGATGCACTTGCAGCATCAGAAGTGGCCTTTATGATACAGGCTGGCCAGCATCG TGGCTTGCATTTCACGGTGGCGCCTGGTCCTCCCGTAGTAACTTCACAACAAGCAGCATCTCCGCACCTACCAGTTTGA
AA sequence Show only first row Show all	>Lus10019102 pacid=23141803 polypeptide=Lus10019102 locus=Lus10019102.g ID=Lus10019102.BGIv1.0 annot-version=v1.0 MSDHLDSGVDRNIAPENGQVGQGADVLPSSGDCSSSQPVEKPTCFIGIEREGEHDLCDENEPLIQTVECRICQEEDSLVNLEVPCACSGSLKYAHRKCVQ RWCNEKGDINCEICRMPYQSGYTAPPPQPEDCAIDMGSDGWTINGGPLDLNDPRILAMAAAERHLLEAEYDEYADGSASGAAFCRSAALILMALLLLRHA MSINDSDGDDDVSTVFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEADALAASEVAFMIQAGQHRGLHFTVAPGPPVVTSQQAASPHLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	0	1
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	1.4	0.9624
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	3.9	0.9576
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	4.0	0.9542
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	5.7	0.9571
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	6.7	0.9561
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	7.2	0.9603
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	9.2	0.9555
					Lus10018014 [exp]	11.0	0.9348
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	11.0	0.9533
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	11.2	0.9490

Compare expression of checked genes

Lus10019102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.