Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14800 392 / 5e-139 EMB2772, AT-P5C1, AT-P5R, P5CR EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034453 [exp] 499 / 0 AT5G14800 417 / 1e-148 EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042600 [exp] 409 / 1e-145 AT5G14800 416 / 4e-148 EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2) Potri.016G007450 [exp] 51 / 4e-08 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03807 [flax] [poplar] F420_oxidored NADP oxidoreductase coenzyme F420-dependent
Representative CDS sequence Show only first row Show all	>Lus10019103 pacid=23141708 polypeptide=Lus10019103 locus=Lus10019103.g ID=Lus10019103.BGIv1.0 annot-version=v1.0 ATGACGACGACTCAGATTCCAGTGGACACATACAAGTTGGGATTCATTGGTGCAGGGAAAATGGCGGAGAGCATCGCTAAAGGTGTGGTGCAGTCGGGTA TCCTCCCACCTTCCCGCATTTCTACTGCTCACTCAAACCCAGCTCGCCGCTCTGCATTTGAGTCATTGGGGGTCAATGTTTTCTCTCAGAATCAACAAGT TGTGGAAGATAGCGATATCGTTGTATTTTCCGTGAAGCCCCAAGTTGTTAAGGATGTGGTCCTCCAGCTACAGCCCTTGCTTTCAAAGAAAAAGCTTTTG GTTTCAGTTGCTGCTGGCGTAAAACTAAAAGACTTGCAGTTGTGGGCAGGTAATGAAAGATTTGTTAGGGTAATGCCTAATACTCCTGCTGCAGTGGGAG AGGCAGCAACAGTCATGAGTTTGGGTGCAGCTGCGACTGAGGAGGATGGAGAACTGATATCTAGGTTATTTGGATCTGTTGGCAAGATATGGAAAGCTAA TGAGAAGTTATTTGATGCAATAACTGGGCTGAGTGGGAGTGGCCCGGCCTACATATATATCGCAATAGAAGCATTGGCCGATGGAGGTGTTGCAGCTGGT CTACCACGGGAACTAGCACTGGGTCTAGCTTCTCAAACGGTTTTGGGGGCAGCAACAATGGTGTGCAAAAGTGGAAAGCATCCAGGGGTGCTTAAGGACG AAGTTGCATCGCCAGGAGGAACGACGATTGCTGGTATACATGAGCTTGAGAAGGAGGGATTCCGCGGTTTGCTAATGAATGCTGTTGTTGGGGCAGCCAA GCGCAGCCGAGAACTCGCTTAG
AA sequence Show only first row Show all	>Lus10019103 pacid=23141708 polypeptide=Lus10019103 locus=Lus10019103.g ID=Lus10019103.BGIv1.0 annot-version=v1.0 MTTTQIPVDTYKLGFIGAGKMAESIAKGVVQSGILPPSRISTAHSNPARRSAFESLGVNVFSQNQQVVEDSDIVVFSVKPQVVKDVVLQLQPLLSKKKLL VSVAAGVKLKDLQLWAGNERFVRVMPNTPAAVGEAATVMSLGAAATEEDGELISRLFGSVGKIWKANEKLFDAITGLSGSGPAYIYIAIEALADGGVAAG LPRELALGLASQTVLGAATMVCKSGKHPGVLKDEVASPGGTTIAGIHELEKEGFRGLLMNAVVGAAKRSRELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10019103 [exp]	0	1
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	5.1	0.7632
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	9.7	0.7354
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	15.1	0.7210
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	17.3	0.7162
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	18.0	0.7198
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	26.2	0.7109
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	29.9	0.7177
AT1G47278			unknown protein		Lus10016567 [exp]	34.9	0.6908
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	35.0	0.6663
AT5G09270			unknown protein		Lus10004877 [exp]	35.6	0.7064

Compare expression of checked genes

Lus10019103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.