Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57900 352 / 4e-122 SKIP1 SKP1 interacting partner 1 (.1) AT4G30640 290 / 7e-98 RNI-like superfamily protein (.1) AT4G05497 85 / 4e-19 RNI-like superfamily protein (.1) AT4G08980 83 / 7e-18 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G05460 73 / 1e-14 RNI-like superfamily protein (.1) AT4G05470 72 / 2e-14 RNI-like superfamily protein (.1) AT4G05475 71 / 1e-13 RNI-like superfamily protein (.1) AT5G52480 65 / 5e-12 RNI-like superfamily protein (.1.2) AT4G03630 61 / 7e-11 RNI-like superfamily protein (.1) AT5G27920 61 / 5e-10 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034452 [exp] 623 / 0 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10038528 [exp] 85 / 2e-18 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10036483 [exp] 80 / 9e-17 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10023277 [exp] 79 / 2e-16 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10010351 [exp] 78 / 4e-16 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10008704 [exp] 67 / 1e-12 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1) Lus10034013 [exp] 57 / 7e-09 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012764 [exp] 57 / 1e-08 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 57 / 1e-08 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104900 [exp] 438 / 8e-156 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.002G099100 [exp] 79 / 2e-16 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.013G013100 [exp] 60 / 7e-10 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 57 / 6e-09 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 56 / 2e-08 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 55 / 4e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 54 / 4e-08 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 52 / 3e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.003G179100 [exp] 52 / 3e-07 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 51 / 5e-07 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10019104 pacid=23141750 polypeptide=Lus10019104 locus=Lus10019104.g ID=Lus10019104.BGIv1.0 annot-version=v1.0 ATGGATGATCCCAACGTCGACCACTCCGCACCTCCCAAGTCGGATCTCCCCGCCGCCGACTGGGCCGCTCTTACTCGCGAGTGCTTGCTCAGCGTCTTCT CGAGGCTCTCCCTTGAAGACCGATGGCGAGGACCGATGCTTGTCTGCAAGTCCTGGCTCGCTACATCCACCGACTCTTCCCTCCACTTAACGTTCGATCT CGCTCTCCGGTTCGATTCAACGCCGGAATCGCCTCGCTGGTGGTCGCCGGAGTTCGAGAGGAGGATCGATTCCATGTTGGAGTCCGTCATTACCTGGAGC AACGGATGCCTCTCCGAGATCCGAACCCGGCACTGCTCCGACAAATCGATCAATCTCGCTGCCGAAAGGTGCCGTAATCTTCAGGCACTTTCGATTCAGA GCTCAGCAAATGTTAGAGATGCATCAATGGCACGACTAGCCTTGAACTGTGCTCAGCTTCATGAGCTGGACATCAGCTACTGCCACAAAATCTCCAACGA AGCGCTAGCTCTCATTGGTCGGAACTGTCCGAAGCTGAAGATTCTGAAGCGGAATTTTCTCAACTGGTTGGATCCTTCGCAGCACCAGGGGATTGTTCCA GACGAGTACCTGGACTCTTGCCCTCAGGACGGGGATTCGGAAGCTGCAGCAGTTGGGAAATGCATGCCGGGATTGGTTCATCTGGAGCTTCGATTCTCCA AGCTGACTGGAAAGGGGATTGGATCAATCTGCCAAGGTTGCTTGGAATTGGAGTACTTGGATCTGTCAGGGTGTGCGAATTTGACAGGGAGGGATATAAT GAACTCTACATCAAGCTTGAAGAATCTGAAACAGGTGAAGAAGCCGAATTTCTACATTCCCAGGTCGTTGATTGGTCACTCAGAAAGGTATGGCCATTGG AATCTGTATGATGATAGGTTTCAGACTGATGCTTTCCGCATCTAG
AA sequence Show only first row Show all	>Lus10019104 pacid=23141750 polypeptide=Lus10019104 locus=Lus10019104.g ID=Lus10019104.BGIv1.0 annot-version=v1.0 MDDPNVDHSAPPKSDLPAADWAALTRECLLSVFSRLSLEDRWRGPMLVCKSWLATSTDSSLHLTFDLALRFDSTPESPRWWSPEFERRIDSMLESVITWS NGCLSEIRTRHCSDKSINLAAERCRNLQALSIQSSANVRDASMARLALNCAQLHELDISYCHKISNEALALIGRNCPKLKILKRNFLNWLDPSQHQGIVP DEYLDSCPQDGDSEAAAVGKCMPGLVHLELRFSKLTGKGIGSICQGCLELEYLDLSGCANLTGRDIMNSTSSLKNLKQVKKPNFYIPRSLIGHSERYGHW NLYDDRFQTDAFRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	0	1
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	2.2	0.8247
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	4.5	0.8528
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	5.3	0.8554
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	7.9	0.8218
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	10.0	0.8260
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	11.1	0.8392
AT3G12630		SAP5	stress associated protein 5, A...		Lus10037702 [exp]	22.6	0.7980
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	23.7	0.8111
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10032305 [exp]	25.5	0.8078
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	28.1	0.8119

Compare expression of checked genes

Lus10019104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.