Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56990 608 / 0 EDA7 embryo sac development arrest 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037400 [exp] 696 / 0 AT3G56990 822 / 0.0 embryo sac development arrest 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08159 [flax] [poplar] NUC153 NUC153 domain
Representative CDS sequence Show only first row Show all	>Lus10019107 pacid=23141811 polypeptide=Lus10019107 locus=Lus10019107.g ID=Lus10019107.BGIv1.0 annot-version=v1.0 ATGACAACACAAGGAGGGAACTTGAAGTCAACCACCATCAATGGAGTCAAAACCTACACCATCTCCCAACGAAATCTTCCTTCGTGGATTACCCCCAAGA AGAAACGAGCTCTACGCAAAGACCCTAATTATCAACAGAGGGTGGAGTTGATTCAGGATTTGAGGTTCGAGACTGCTACTTCCAGAATCAAGATAACACC TAATGGGGAGTATGTTATTGCTTCAGGAATTTATCCCCCGCAAGTCAAAGTTTATGAGCTAAGAGAACTATCCATGAAGTTTGAAAGGCACTTTGAATCT GAGATCATTGACTTTCAGATACTGGATGAAGACTACTCAAAGCTTGCATTTCTTTGTGCTGATCGCTCTGTTTGCCTACATGCAAAATATGGGAAGCATT ACAGTTTGCGGATTCCAAGCAAGATCCATGGGCTGGTTGCATCTGGTGGTGAGGATGGTGCTGTGGAATGTTTTGACATGAGAGTGAAGAACGGTGCTGT GAATCGTATTGACACTTCAGTTGCCAGAATTGATGCTGTTGCACCTTCTGGCGATATAGACCAGGAGGTAACTGCACTGGAGTTTGACGAAGATGGTGGT TTCCTAATGGCTGTTGGTAGTAGTGGTGGAAAGGTACTGTTGTATGACTTGCGATCATCAAATCCTGTGAAAGTTAAGGATCATCTGTATGGCAGTCGAA TATTGGACATAAAGTGGCACCATTCTCTCAATTCCGAGGGTCGCAAATTAATTACAACAGACAGTCATATTGTTAGAATATGGGATCCTGAGACTGGAGA GGGTATGACAAGTATTGAGCCCAATGGTGGTACAATTAATGATATATGCGTGTTCAAGAACAGTGGTCTGATGTTTCTTGCTTTGGATGGAAGCCAAATA CCATCATATTTCATACCTTCTCTGGGACCTGCTCCTAAGTGGATCGCTAGCCTTGAAAACCTGACGGAAGAGCTGGAAGAGGATGATCAGACCGCCGTTT ATGACAATTTCAAATTCTTGACAAAAGAAGATCTGGAAAGATTGAATATGACAAAGTATATAGGCACTAACCATCTTAGAGCATACATGCATGGCTTTTT TGTGGATTTGCGGCTATACCAGAGGATTGCGAAAAAGCTGCCCAAAGTTAACCGCCTCTTCGCACGCGACATCCTTGAAAAAGAAATTGAAACTCAGAGA AAAGATGAAGATGGAATCGAGAAGAAAAAGGGGTCCAAGAAAAGCAAAGGACTTGGCAGTGAGATATTCGACGATCCACGATTCGGTGGGATGTTCACAG AAAAGGACTTCGAAATTGATGAGACATCGCCAGAGTATTTGGCTCTGCATCCAATGGGTCCTTCCACTAGGCAGCCATCTTCATTTGAAGAACATTTTGA ACCCACAGCAGGGGACGAGGAGCAGGATTTCAGCAGTTCTGATGAAGAACCTGATGCAATTAAAGGGAAATCAAGAGTTCCAAGATTATATGAAGTAAGG GACGAAAGACATGCGGAGGCATTTCGAAATAATGTCTCACTTGCTGTTGAGGATTCTCTTCCAATGGGAGAGAGGATTGCTTCTCTTCGTGAAGATCCCC ACAATTCAGGCATTCTGAAGAATGTGAAGTTTGGGCCAGGGGGGTCGCGGGAGATCTCATATGTTCCAAGAGGTAGGGCCAAGTATAGAGAAGATAACGA AGACAAAGATGACAGAGAAGAGGGCAGGCATGGAAGAAAGAGAGGAGTTGATGCATTAGGACTCAAGAAAGATGGGCCAGAGTTTCGAGGGCGAGGACGA GGACGTGGACGTGGATTTGGACGAGGACGTGGAAATGGACGTGGGGGTGGACGGGGAAGAGGCAGGCGGTGA
AA sequence Show only first row Show all	>Lus10019107 pacid=23141811 polypeptide=Lus10019107 locus=Lus10019107.g ID=Lus10019107.BGIv1.0 annot-version=v1.0 MTTQGGNLKSTTINGVKTYTISQRNLPSWITPKKKRALRKDPNYQQRVELIQDLRFETATSRIKITPNGEYVIASGIYPPQVKVYELRELSMKFERHFES EIIDFQILDEDYSKLAFLCADRSVCLHAKYGKHYSLRIPSKIHGLVASGGEDGAVECFDMRVKNGAVNRIDTSVARIDAVAPSGDIDQEVTALEFDEDGG FLMAVGSSGGKVLLYDLRSSNPVKVKDHLYGSRILDIKWHHSLNSEGRKLITTDSHIVRIWDPETGEGMTSIEPNGGTINDICVFKNSGLMFLALDGSQI PSYFIPSLGPAPKWIASLENLTEELEEDDQTAVYDNFKFLTKEDLERLNMTKYIGTNHLRAYMHGFFVDLRLYQRIAKKLPKVNRLFARDILEKEIETQR KDEDGIEKKKGSKKSKGLGSEIFDDPRFGGMFTEKDFEIDETSPEYLALHPMGPSTRQPSSFEEHFEPTAGDEEQDFSSSDEEPDAIKGKSRVPRLYEVR DERHAEAFRNNVSLAVEDSLPMGERIASLREDPHNSGILKNVKFGPGGSREISYVPRGRAKYREDNEDKDDREEGRHGRKRGVDALGLKKDGPEFRGRGR GRGRGFGRGRGNGRGGGRGRGRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	0	1
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	1.4	0.9112
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	1.7	0.9106
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	1.7	0.9201
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	2.2	0.8867
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	3.3	0.8643
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	3.5	0.9011
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	6.0	0.8607
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	6.5	0.8828
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	6.9	0.8803
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	9.2	0.8315

Compare expression of checked genes

Lus10019107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.