Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034451 [exp] 492 / 8e-177 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157800 [exp] 62 / 1e-10 AT2G30480 147 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019108 pacid=23141723 polypeptide=Lus10019108 locus=Lus10019108.g ID=Lus10019108.BGIv1.0 annot-version=v1.0 ATGGATACCTCAACATCATACCCAACCGAAAGGCATCGTCGAAAACATGAAAATCCCTTTGATGGGCATGATACTACCATTTATGGCGCCAGCAGCATTG AGGCTGGAGATAGGCATCAGAAAAAATGGGGCAACTCTCATAAAAGAGGGCAGAGATACATGTCTGGAAGATCTCCACCTAGACCAACTCTGCTGGATCC AGATCTGGGGAATGACTTTGACCCTCTTTTAAAAGAGAAGAGAGGCCGTTACAGTGATTGGCCGTATGAAGAAGGATATAAGGATTTCAACAATGTACAT CATGGCTCAGAAGCGAATCATCCGTCGTCCTTTGTTTCCAAGCCTTGGAATGAAGATCTATCTGATGCTTTTCCAGTCCACCGTGATCACCAAATCGACC CCATTGCTCCTGAACCATCTGGCGCCAAACACTTATATGATTCTCCAACGTACTCATTCCCAAAGGTTAAACTTCCGACTTCTCCGGATTTTAAGTTTGA CGAAAGGACTCCTAAATTCTGTAAAGATGATGATTTTTTCCATGGAGAATGGTCCATGCCCCCCAATCTATCACCAGCACAAGAAACTGTGAGCAATGCC ATGGGATACAACAAACCACAATGTCACCGCGGAAACGATGGAAACATGGAAGGTTTGGATGATATTGCTTCTGACTTTGGGGAGAATGTGAAAGATGGAG CAGCAGCGTTGGAGACGTCATCGTCAGTGAACATCCCTGAAAAGTCCAATGCCACCAGCATTGATGATGAAGTGGAAGTTGCAGGAGGACATCGAAAACA ACGTGAAGCAGCTCGGGTTCCTCCTCCCAATAATGCTCGTCAAAGCGACAACAATGCAGGTAGCCCCCCACAATGTGGAACACGAAGGATTCGTTCGGAG GAAGACGGTGACGAGGATGGACAAGTATGGTGTGGTTTCTTCACCTCAGGTGATGATGCTTGA
AA sequence Show only first row Show all	>Lus10019108 pacid=23141723 polypeptide=Lus10019108 locus=Lus10019108.g ID=Lus10019108.BGIv1.0 annot-version=v1.0 MDTSTSYPTERHRRKHENPFDGHDTTIYGASSIEAGDRHQKKWGNSHKRGQRYMSGRSPPRPTLLDPDLGNDFDPLLKEKRGRYSDWPYEEGYKDFNNVH HGSEANHPSSFVSKPWNEDLSDAFPVHRDHQIDPIAPEPSGAKHLYDSPTYSFPKVKLPTSPDFKFDERTPKFCKDDDFFHGEWSMPPNLSPAQETVSNA MGYNKPQCHRGNDGNMEGLDDIASDFGENVKDGAAALETSSSVNIPEKSNATSIDDEVEVAGGHRKQREAARVPPPNNARQSDNNAGSPPQCGTRRIRSE EDGDEDGQVWCGFFTSGDDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019108 [exp]	0	1
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	3.2	0.7688
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	8.7	0.7260
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	10.4	0.7341
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	23.0	0.7119
AT2G30480			unknown protein		Lus10019109 [exp]	28.4	0.6838
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	29.2	0.7097
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	31.0	0.7237
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10000778 [exp]	35.7	0.6467
AT2G28390			SAND family protein (.1)		Lus10021472 [exp]	39.4	0.6615
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	45.5	0.7105

Compare expression of checked genes

Lus10019108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.