Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30480 92 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034450 [exp] 252 / 4e-84 AT2G30480 81 / 6e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157800 [exp] 138 / 5e-36 AT2G30480 147 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019109 pacid=23141830 polypeptide=Lus10019109 locus=Lus10019109.g ID=Lus10019109.BGIv1.0 annot-version=v1.0 ATGGATGGAGTAGAGAGTTATTGTGAGGAGAAAAAGATTTGTGAGCAAAATCAGAAGGAGCATCGGTCTCTGGATGTCCTCACTTTGCTCAACTTGTCAA GGGATTCTCCACTGTGCAAACCTGCAAATGTATGTCCATGTGATAATCACCATAAGCACAATGCAGCTGCTACGATTTATGAATCAGGACATTGTTTAGG CAACCAAGCTGAAAATGCATCGCCAAAGAAGGTCCTGGTTACTGCTGCAGAAAATCACCATGCCGTTTCTGGTGGAGTTGAGCGTGTAAAAGATTTCCAG GAGACAGCAACTCAGAAGAAGCTGTCTGTCTTTGATTTGGTCGATGATGATGATGGAGTAAACTTTAAAACCATTAAAAGTCCGGCCCATGAAGCTCATG TTGCATTTTCAGTTGATGAGTTTCCCACCTCAGGGTTGGGTAATGTGGGGGCAGAAACGCCAGTCCAGTCACCACAACGACCCGACAGGTATGGCTCGTA TGATTACTTCGCACCGTCGAAGGCTGCAAGGCCAAACAATGTTAAGATCCACAATGACTTTGAGCGAGAAGTGGAAGTAATGATGCAAGATATTGGGTTA CCTCCAAGTATCAATCACTTTGATTTCTCAAAGACCGACCAATTGCATGGAAAGTTCAAGAATTCACCTACTTCAAGAGATCACGGACAACTTGATAGCC ACTACAGGGATACTAGCAGCTCTTACCGGGACAAAATAAAACCCCACAGACAAAACAACTTTGACTTATGTGATGCTTCACCTACCTTATTGGACGAAGA TTTCGTTGATGAAAATGATAGCTTTTGGAGTAGCTTGCCGCATGGAACGCATGATGAGTCTGCACATTTAAAGTTTTACGGATCTACAGGATTGGAAGAT TACTCCTTCGAAGGGTCTCATGTGCAAAGGAAGAAAAGAAGTTGTATCAAAGAAGTAGATGAATACGATGTCTCAGGTGAGCTCCCTCTCAGCTGA
AA sequence Show only first row Show all	>Lus10019109 pacid=23141830 polypeptide=Lus10019109 locus=Lus10019109.g ID=Lus10019109.BGIv1.0 annot-version=v1.0 MDGVESYCEEKKICEQNQKEHRSLDVLTLLNLSRDSPLCKPANVCPCDNHHKHNAAATIYESGHCLGNQAENASPKKVLVTAAENHHAVSGGVERVKDFQ ETATQKKLSVFDLVDDDDGVNFKTIKSPAHEAHVAFSVDEFPTSGLGNVGAETPVQSPQRPDRYGSYDYFAPSKAARPNNVKIHNDFEREVEVMMQDIGL PPSINHFDFSKTDQLHGKFKNSPTSRDHGQLDSHYRDTSSSYRDKIKPHRQNNFDLCDASPTLLDEDFVDENDSFWSSLPHGTHDESAHLKFYGSTGLED YSFEGSHVQRKKRSCIKEVDEYDVSGELPLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30480			unknown protein		Lus10019109 [exp]	0	1
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	1.7	0.7877
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	16.1	0.7031
					Lus10019108 [exp]	28.4	0.6838
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	29.3	0.7117
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	34.8	0.7019
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	37.8	0.6718
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	38.1	0.7071
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	39.9	0.6505
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	41.3	0.7056
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10042747 [exp]	41.4	0.6316

Compare expression of checked genes

Lus10019109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.