Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 491 / 2e-173 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT4G22710 139 / 9e-37 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 138 / 2e-36 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT2G40890 131 / 4e-34 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G07990 124 / 8e-32 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G28740 124 / 1e-31 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37330 122 / 6e-31 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT1G66540 119 / 6e-31 Cytochrome P450 superfamily protein (.1.2) AT4G37360 119 / 6e-30 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37340 119 / 9e-30 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034449 [exp] 571 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10035011 [exp] 512 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 511 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10027598 [exp] 346 / 5e-116 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019457 [exp] 129 / 3e-33 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 127 / 8e-33 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10008917 [exp] 127 / 9e-33 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10043308 [exp] 127 / 1e-32 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10024585 [exp] 122 / 1e-32 AT4G12300 339 / 5e-115 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130700 [exp] 523 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.013G157900 [exp] 516 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.018G146100 [exp] 362 / 2e-122 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.013G073300 [exp] 132 / 2e-34 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G031000 [exp] 131 / 3e-34 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G033300 [exp] 129 / 3e-33 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.005G143800 [exp] 128 / 3e-33 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G205200 [exp] 128 / 3e-33 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.016G031100 [exp] 127 / 9e-33 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.014G037500 [exp] 127 / 2e-32 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019110 pacid=23141836 polypeptide=Lus10019110 locus=Lus10019110.g ID=Lus10019110.BGIv1.0 annot-version=v1.0 ATGTTTGACCGGAGGTTCGAATCGGAGCAGGATCCGTTGTTTAATAAGCTCAAGGCGTTGAATGGAGAGCGGAGTCGGTTGGCTCAGAGCTTCGAGTACA ACTATGGAGATTTCATTCCGATCTTGAGGCCTTTCTTGAGGGGCTATTTGAAGGTCTGTGAGGAGGTTAAGAACAGGAGGCTTCAGCTATTCAAGGATTA CTTCGTCGAGGAGAGGAAGAGATTGATGAGCACAGCTGCGATGACGAACGAAGGGCTGAAGTGCGCCATGGATCACATTCTGGAAGCACAGCAGAAGGGT GAGATCAACGAAGACAACGCACTCTACATCGTCGAGAACATCAACGTCGCCGATCTCCCACCTACCCCCTGCACATTTGTTTCAATGAAGAAAATGTCGC TTTTTCTTTCTGATGCTGCTGATGCTATCGAGACTACACTGTGGTCAATCGAGTGGGGAATCGCCGAGCTCGTAAACCACCAACAAATCCAGAACAAGCT AAGGCAAGAACTCGACACCGTTCTCGGACCAGACCACCAGATCACCGAGCCCGACATCCAGAAGCTGCCATACCTCCAGGCAGTGGTGAAGGAGACTCTC CGTCTCAGAATGGCCATCCCTCTGCTGGTCCCGCACATGAACCTCCACGATGCCAAGCTCCGAGGATTCGACATCCCGGCAGAGAGCAAGATCCTGGTGA ACGCGTGGTGGCTGGCCAACAACCCCGAACAGTGGAAGAGGCCCGAGGAGTTCAGACCGGAGAGGTTCCTGGAAGAGGAGGCTAAAGTCGAGGCCAACGG GAACGACTTCAGGTACCTTCCGTTCGGAGTTGGGAGGAGGAGCTGCCCTGGAATCATTCTTGCACTCCCCATTCTGGGGATTACGATCGGGCGTCTGGTG CAGAACTTCGAGCTGTTGCCTCCTCCCGGGCAGTCCAAGCTTGATACGACTGAGAAAGGTGGTCAGTTTAGTTTGCATATCTTGAAGCACTCGACCATCG TGGCTAAGCCAAGATCGGTTTGA
AA sequence Show only first row Show all	>Lus10019110 pacid=23141836 polypeptide=Lus10019110 locus=Lus10019110.g ID=Lus10019110.BGIv1.0 annot-version=v1.0 MFDRRFESEQDPLFNKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKVCEEVKNRRLQLFKDYFVEERKRLMSTAAMTNEGLKCAMDHILEAQQKG EINEDNALYIVENINVADLPPTPCTFVSMKKMSLFLSDAADAIETTLWSIEWGIAELVNHQQIQNKLRQELDTVLGPDHQITEPDIQKLPYLQAVVKETL RLRMAIPLLVPHMNLHDAKLRGFDIPAESKILVNAWWLANNPEQWKRPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLV QNFELLPPPGQSKLDTTEKGGQFSLHILKHSTIVAKPRSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	0	1
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	1.0	0.9861
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	1.4	0.9818
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	3.5	0.9713
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	5.5	0.9817
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	5.5	0.9772
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	6.0	0.9765
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	8.4	0.9731
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	8.5	0.9783
					Lus10004651 [exp]	8.5	0.9738
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	8.8	0.9730

Compare expression of checked genes

Lus10019110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.