Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58320 260 / 5e-81 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G30500 256 / 1e-78 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G03080 99 / 2e-21 kinase interacting (KIP1-like) family protein (.1) AT4G02710 97 / 1e-20 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 96 / 2e-20 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 93 / 2e-19 kinase interacting (KIP1-like) family protein (.1) AT2G22560 91 / 1e-18 Kinase interacting (KIP1-like) family protein (.1) AT1G03470 84 / 6e-18 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G09720 84 / 1e-16 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 82 / 4e-16 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034448 [exp] 845 / 0 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10014687 [exp] 103 / 1e-22 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 102 / 2e-22 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 102 / 2e-22 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 101 / 3e-22 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 97 / 1e-20 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 92 / 3e-19 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 92 / 4e-19 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 89 / 3e-18 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158100 [exp] 434 / 4e-146 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 413 / 4e-138 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G061600 [exp] 164 / 5e-44 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.010G083300 [exp] 100 / 1e-21 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 100 / 2e-21 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 99 / 3e-21 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 97 / 6e-21 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G207700 [exp] 88 / 2e-18 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 89 / 4e-18 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 87 / 8e-18 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10019111 pacid=23141735 polypeptide=Lus10019111 locus=Lus10019111.g ID=Lus10019111.BGIv1.0 annot-version=v1.0 ATGGATCGCAACATCAAGCGGATGCTGAAGCTGATTGAAGAGGATGGAGATTCATTTGCCAAAAAGGCTGAGATGTATTATCAGAAAAGGCCAGAATTGA TCTCTCTTGTCGAGGAGTTCTACCGCATGTATCGGTCTCTAGCAGAGCGTTACGATAACGTGACAGGCGAATTGAGAAAGAGTATCCCCGTAGATCTCCA ATCTCAGGGCTCCAGTGCCTCTGATCTTGCCTCTGAACCACCGTCTTCACTTGCATCTCCTGTCCCTGATAAAAAGCCAAGTTCTCGAAAATCGGGTCCT AGGGCTGCTGGTTTCGATTTCTTCCTTGGTTCTGCGGAATCTAATTCTGATCATGGCCACAAAGAAGGGAATGAATCATCGTCACTGTCAGATTCAGATT CCGAGTCGGACAATTCATCGGTTAACAATTACTCAGGTCTAGTAATAGGTTCTGCTGCTGATCAAGCATTGACCAGGAAGATTGTGGAATTAGAATCCGA GCTTCGTGACACGAAGGAGAAACTCCGCATTCTTCAAGAGCAACAAGAAGGAACCCAAAAGGAGAATCCTTCCGACGACCTTCTTTCCAGAATTGCTGAA TTCGAGCTCGAGCTAAAGAGAGCAAATGAAAGAATCCACCTTTCGGAAGAAGAGACTGTTCGGTTGAAATCCGAGCTTGAGAAATTCAAATCTTCGGACA ATGCCAATTCGAACGATGATGGAGGAGAAGAAGTGAAGATGAACCAATCGATTGAAGGACAGGAAGCTGAAACTTTAACCTCAAACGGACAGATTCAGAT TCAGTCACTAACTGAAGAACTCAGTATCACAAAATCCAAGCTTGAAAATTCCGAGAAAGAAATAGGTAGTTTGAAACATCAGCTTGCATCGGCCCGGAAG GAGCTAACCACATGGAAAAACAAATTGAATGCAGACCGAAAAGAGGTGTCGAAGCTGCAGGAAAGAGTTTCACGATTGAAAACCAGCTTAACAGACCGGG ATCAAGAGGTAAGAGAATTGAAAACTGCAGTTTCAGACGCGGAAGAGAAGATATTCCCCGAAAAGGCACAGATCAAGGCCGAAATGTCGAAGCTGGTTGA GGAACAAAGCTCACTCATGGAGCAGCTAAGAGAATGGGAATCTCGCGGCCGTTCTTTAGAGGACGGCATCAGAATGCTGCAAGCTGAGAAGTTGGAAATG GAGGTAAGACACTGCTCCGAAACGGAGCAGATGAAGGCTGAGATTGAAAACCGAGACGGACACATAGTGAGGCTGGAGTCACTACTGAGCACATTGAGAT CAGAGAAGGAGAAGTTGAAGGTGAGAGCAAATGCAATGGAGGAAGAGTTGGTTTCTCGGGAGTATCAGATTGGTGCGATGGAGAAGCACTTGGAGGAGTT GCATAGAGAACTTGAAGGGATGACAATGGTGGCGGAGGAGGCGCGGAGGAAAGCAGCGGAAATGGAAGAGGAGGTGGGAAAGCAGAGGAAGCTGGTGGAG GAAAGTGCGGAGGAGAAGCGTGAGGCGATAAGGCAGCTGTGTTTGTCGATAGAATTTTACAGAGTTGCGTATCATGAACTGAGGCTGGCGTTTGCTGGTG GTGGGCATGGAACTACTGGAAGATCAGTTGCTGTGATGGCTGCGTAG
AA sequence Show only first row Show all	>Lus10019111 pacid=23141735 polypeptide=Lus10019111 locus=Lus10019111.g ID=Lus10019111.BGIv1.0 annot-version=v1.0 MDRNIKRMLKLIEEDGDSFAKKAEMYYQKRPELISLVEEFYRMYRSLAERYDNVTGELRKSIPVDLQSQGSSASDLASEPPSSLASPVPDKKPSSRKSGP RAAGFDFFLGSAESNSDHGHKEGNESSSLSDSDSESDNSSVNNYSGLVIGSAADQALTRKIVELESELRDTKEKLRILQEQQEGTQKENPSDDLLSRIAE FELELKRANERIHLSEEETVRLKSELEKFKSSDNANSNDDGGEEVKMNQSIEGQEAETLTSNGQIQIQSLTEELSITKSKLENSEKEIGSLKHQLASARK ELTTWKNKLNADRKEVSKLQERVSRLKTSLTDRDQEVRELKTAVSDAEEKIFPEKAQIKAEMSKLVEEQSSLMEQLREWESRGRSLEDGIRMLQAEKLEM EVRHCSETEQMKAEIENRDGHIVRLESLLSTLRSEKEKLKVRANAMEEELVSREYQIGAMEKHLEELHRELEGMTMVAEEARRKAAEMEEEVGKQRKLVE ESAEEKREAIRQLCLSIEFYRVAYHELRLAFAGGGHGTTGRSVAVMAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	0	1
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	1.0	0.8990
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	1.4	0.8829
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	1.7	0.8786
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	2.0	0.8781
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	4.9	0.8437
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	6.5	0.8529
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	11.2	0.8221
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	11.2	0.8371
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	13.3	0.8300
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	14.3	0.8589

Compare expression of checked genes

Lus10019111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.