Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 795 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 649 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 608 / 0 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 549 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 448 / 4e-150 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 426 / 6e-142 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 423 / 3e-140 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 421 / 1e-139 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 398 / 4e-130 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 380 / 2e-123 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034446 [exp] 1144 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 959 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 949 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 593 / 0 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 590 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 550 / 0 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033065 [exp] 494 / 3e-168 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 494 / 4e-168 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031350 [exp] 445 / 5e-149 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131500 [exp] 886 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 883 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 751 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 744 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 608 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 578 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 566 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 558 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 543 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 470 / 1e-158 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019113 pacid=23141753 polypeptide=Lus10019113 locus=Lus10019113.g ID=Lus10019113.BGIv1.0 annot-version=v1.0 ATGGTAACAGGATCGCTTGGCCGTCACATCTTGATGAATCTACGCCAAGTTGATTCTTTGAGGAGGCTCATCCGGGTTTCGGTCCTACAATGCTTCTTTG TTCTAGTCACCCTGCACTCTCTAGCCATTGCAGATCTCAAATCAGATAGGCAAGCTCTTCTAGATTTTGCTACTGTTGTACCACATTACCGTTTCCTTAA CTGGAATCTCGCTGCTTCAACATGTCACACTTGGTTGGGTGTCACTTGCAACTCAGACGGTTCTCGTGTGGTTGCACTCCGGCTCCCCGGGATCGGACTT GTAGGCTCTATACCTCCCAACACTCTAGGTAAACTCGATGCCTTGAAGGTTCTTAGCCTTAGATCGAATGTCCTTAGTGGCCATCTTCCGACCGACGTTG CTTCTCTTCCCTCGCTTCATTCCCTATACTTGCAGCACAATAACTTAAATGGTACCGTTCCTACCACTTTTTCCTCTCAACTTAATGTATTAGATCTCTC ATTCAATAACTTCACAGGCAAGATTCCCCGAATGTTGTCGAATTTAACTCAACTCATTAGCTTAGACCTCCAAAATAATTCTCTCTTTGGAGCCATACCG GACCTTAATCGTACCGTGCTCAAACATTTGGATTTGAGTAACAACCATTTGAACGGTTCGATTCCTTCATCTCTTCAAACTTTCCCCAAGTCATCCTTTG CTGGAAACTCTCTCTTATGTGGTCTGCCTCTTAATCCCTGTGCTGTGATTCCCCCTCGGTCTCCATCTCCACAGCCTCCACCAGCAGTTCGTCACAAGAA AGGCACAAAAGTGAGGCTTTCAACAGGGGTAATCATTGCCATTGCAGTTGGAGGATCTGCAGTGATATTTCTCATTGCATTGATTATTCTATGCTGCTGC TTAAAGAAAAATGACAATGAAGGCGGTAGTAGTGTGTCGAAGGGGAAGGCTGTAGATAAACCGAAAGAGGAATTTGGGAGTGGAGTGCAAGCAGCTGAGA AAAACAAGCTGGTGTTCTTTGAAGGTTGTTCATATAATTTCGATCTTGAGGATCTATTGAGGGCTTCGGCTGAAGTGCTGGGGAAAGGTAGTTATGGGAC TGCATATAAAGCAGTATTGGAGGAATCAGTAACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTAGCAGGGAAAAGAGAGTTTGAACAGCAGATGGAGATT GTAGGGAGAGTTGGTCGGCATCCGAATGTCGTACCACTCCGTGCTTATTATTACTCCAAGGATGAGAAGCTTCTCGTGTTTGACTACGTTCCGACTGGCA GCTTAAACACGCTTTTGCATGGAAACAGGGGAGTTGGGAGAACTCCCCTTGACTGGGACAGTAGGATAAAGATAGCAGTTGGCATAGCAAAGGGAGTTGC ACACCTGCATTCGGCAGGCGGTGCGAAGTTCACTCACGGCAACATCAAGTCCTCAAACGTTCTAATGACTTCCGATAACGAAGGCTCCATTTCCGATTTC GGGATGACACCTCTCATGAACGTCCCTCCCACGACTCCCTCGCGAGGCACAGGCTACCGTGCACCTGAAGTGATCGAAACACGCAAGCACAGCCACAAAT CAGACGTGTACAGCTTTGGAGTGCTGATACTCGAAATACTGACAGGGAAAGCGCCGATGCAATCCCCCGGAAGAGGGGACGACATGATGGACCTTCCGAG ATGGGTGCAGTCGGTGGTGAAGGAAGAGTGGACGGCTGAGGTTTTCGACGTGGAGCTGATGAAGGACCATAATGTGGAGGAGGAAATGGTGCAGATGCTG CAGATAGGGATGGCTTGCGTCGCCAAAGTACCGGACATGAGGCCGAACATGGTGGAAGTTGTTCGAATGATGGAGGAAATCCGGCAATCAGACTCGGAGA ACCGGCCTTCTTCAGAAGATAACAAATCCAATGTGCAGACTCCTTGA
AA sequence Show only first row Show all	>Lus10019113 pacid=23141753 polypeptide=Lus10019113 locus=Lus10019113.g ID=Lus10019113.BGIv1.0 annot-version=v1.0 MVTGSLGRHILMNLRQVDSLRRLIRVSVLQCFFVLVTLHSLAIADLKSDRQALLDFATVVPHYRFLNWNLAASTCHTWLGVTCNSDGSRVVALRLPGIGL VGSIPPNTLGKLDALKVLSLRSNVLSGHLPTDVASLPSLHSLYLQHNNLNGTVPTTFSSQLNVLDLSFNNFTGKIPRMLSNLTQLISLDLQNNSLFGAIP DLNRTVLKHLDLSNNHLNGSIPSSLQTFPKSSFAGNSLLCGLPLNPCAVIPPRSPSPQPPPAVRHKKGTKVRLSTGVIIAIAVGGSAVIFLIALIILCCC LKKNDNEGGSSVSKGKAVDKPKEEFGSGVQAAEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESVTVVVKRLKEVVAGKREFEQQMEI VGRVGRHPNVVPLRAYYYSKDEKLLVFDYVPTGSLNTLLHGNRGVGRTPLDWDSRIKIAVGIAKGVAHLHSAGGAKFTHGNIKSSNVLMTSDNEGSISDF GMTPLMNVPPTTPSRGTGYRAPEVIETRKHSHKSDVYSFGVLILEILTGKAPMQSPGRGDDMMDLPRWVQSVVKEEWTAEVFDVELMKDHNVEEEMVQML QIGMACVAKVPDMRPNMVEVVRMMEEIRQSDSENRPSSEDNKSNVQTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	0	1
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	2.6	0.8674
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	3.9	0.8342
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	6.6	0.8448
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	8.1	0.8186
AT2G26680			unknown protein		Lus10019418 [exp]	8.7	0.8310
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	11.4	0.8233
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	12.0	0.8141
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	13.0	0.8111
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	14.7	0.7636
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	15.7	0.8168

Compare expression of checked genes

Lus10019113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.