Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06840 1203 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 934 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 665 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 468 / 1e-149 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 426 / 4e-134 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 390 / 2e-120 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 382 / 4e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 288 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 263 / 2e-76 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G30570 266 / 1e-75 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034445 [exp] 1711 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 962 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 903 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 733 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 622 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 455 / 6e-144 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 377 / 1e-115 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 317 / 6e-98 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 286 / 2e-87 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159200 [exp] 1276 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 1265 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 1264 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G111100 [exp] 1042 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 1029 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 1001 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 991 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 457 / 1e-145 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 455 / 1e-144 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 445 / 8e-141 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10019114 pacid=23141834 polypeptide=Lus10019114 locus=Lus10019114.g ID=Lus10019114.BGIv1.0 annot-version=v1.0 ATGTGTTCTGTACGGAAGGCATCGTCTCTAGTCGGAGCTCTGTTGCTTACGTGTCTCTACTGCTCTGCGCCTTTTGCTGCAGCGCAGTCCATTACTGACC CTGTTGAAGTCAAGGCATTGGGGGACGTTCACCGAAGTTTGATTGATATCAATAAGAATTTGAGCAATTGGAATAGAGGGGATCCATGCACTTCCAACTG GACTGGGGTTCTGTGCTTCAATTCACCTATGGATGACGGCTATCTACATGTTAGAGAATTGCAACTGATCGACATGAATCTTACAGGAACTTTATCACCA TCCCTTGGGGAATTTTCGTATATGAGGATCTTGGATGTTATGTGGAACAACATAAGTGGAAGCATCCCCAAGGAGATAGGCAACATTAAGTCTCTGGAGC TATTGCTCCTTAATGGAAACAATCTAACAGGTTCTCTTCCGGAAGAGCTTGGCTACCTTCCGAACTTGGACAGAATACAGATTGACCAGAATCATATATC AGGAACAATACCCAAATCATTTGCATTCCTGAACAAGACCCAGCACTTTCACATGAACAACAATTCAATAAGCGGGCAAATCCCTCCAGAGCTTTCTAGA TTACCAAATCTACTTCATTTCCTTCTGGACAACAACGACTTAACTGGATACCTTCCTCCTGAGTTCTCTGAATTGCCAAGAATACTTATACTCCAACTTG ACAATAACAACTTTGAGGGGACCTCGATTCCACCGTCTTATAGCAACATGACTAAATTGTTGAAGTTGAGTTTGAGAAATTGTAGCTTGGAAGGACCAAT ACCTGATCTGAGCCGTATCCCAGACCTTGGATATTTGGACCTAAGTTCAAACGAGCTGAATGGAACCATACCTTCCAATAAACTTTCAGACAATATCACA ACCATAGACCTGTCCAACAACAATCTTGTCGGCACTGTTCCACCCAGCTTTTCAGGTCTTCCTCTTCTTCAGATATTGTCACTTGCAAATAACTCACTGA ACGGCTCTATTCCATCGAACATATGGCAGAGTAGGAGTAACAGTGGAAGCAGAGGACTTGTTTTGGATTTGGAAAACAACGGCTTCTCAGATATCGCTGG TGCTACTACTCTCCCTCCAAACGTGACACTCTGGCTTCAAGGAAACCCTGCTTGCTCAAATTCTAGCCTAGTCAAGTTTTGTGGAGCTCCTGTTATTGAT TTAAACAAACCGAATTCAACAAACTCTACTTCGGCCTGCCCAGTTCAAGCATGCCCCGCCCCATTTGAATATTCCCCAACATCGTCTACATCATGCTTCT GTGCTGCTCCTCTGATAATTGGATACCGATTGAAAAGTCCTGGATTCTTTGATTTCCGACCCTATAAAGATGCATTTGAGTGGTACTTGACTGACGGACT CAGAGTACAACTTTCTCAACTAGACCTAAATCAATTTTCCTGGGAAAAGGGGCCACGAATCAGAATGCACTTGAAGATCTTCCCTGTATATAATCCCAAC TCCAATACCTCTCATCTCTTCAATAATAGTGAGGCTCGACGCATCGTAAACATGTTTACGGGTTGGAACATTCCTGACAGTGAGATATTTGGGCCGTACG AACTTCTCTACCTCACTCTGCTGGACCCTTATAGAAATGTAATTGATGGAGGCTCTGATAAATCTGGGATAAGTAAGGGTGCTGTGGCTGGGATAGTCTT GGGGGCGATTGCAGGTGCAGTCACAGTATCTGCCATTCTCACACTTCTTATAGTCAGAACACAAATGCGGAAGTATCGTGTAGTTTCAAAAAGGCGCCAT CCATCTAAAGCCTCCATCCGGATTGAGGGGGTCAAGGGTTTCACTTATGCTGAAATGGCTTTGGCGACACATAATTTCAGTAATTCTGCCCAAGTAGGTC AAGGAGGGTATGGAAAAGTGTACAGAGGTGTTATGGCTGAAGGCACTCTCGTAGCCATCAAACGTGCTCAAGAAGGTTCTTTACAAGGGGAGAAGGAGTT CTTGACTGAAATACAATTGCTCTCAAGACTTCATCATAGAAACCTAGTGTCTCTGACTGGGTACTGTGATGAAGAAGGTGAACAGATGTTGGTTTACGAG TTTATGCCGAATGGCACTTTAAGAGATCACCTCTCCGGCAAGACCAAAGAACCATTGAGTTTCGCAACTCGAGTAAGAGTAGCTTTGGGGTCAGCTAAGG GAATCCTTTATCTTCACACAGAAGCAGATCCCCCAATTTTCCACCGAGATATAAAGGCAAGCAACATATTGTTGGACAACAGGTTCAATGCAAAGGTTGC AGATTTCGGACTTTCCAGACTTGCTCCAGTTCCAGATCTTGAAGGTGCGGTGGCGGCTCATGTATCCACAGTTGTAAAGGGTACACCGGGTTACCTGGAT CCGGAGTACTTCCTAACGCACAAATTGACGGACAAAAGTGACGTTTACAGCCTGGGCGTGGTGTTCCTTGAACTATTGACCGGTATGCAACCGATCTCGC ACGGGAAGAACATTGTTCGCGAGGTAAATATGGCATACCAGTCTGGTATGATATTCTCAGTGATCGATGATAAAATGGGATCATACCCTTCAGACTGCGT AGAGAAGTTTCTCACATTGGCACTGAAATGCTGCAAAGATGAGACGGATTCGAGACCGTCGATGGCTGAAGTGGTTCGAGAACTGGAGACCATATGGTCA TTCCTGCCGGAATCTGAAACCAAAACATCAGAATCAGTAACCACTAAGGATACAGATTCGAAAATGGCCGATGGCAGTACGCCGCCCTCGTCAGCTTCCT CGTCACTCAAGAATCCTTACGTGTCATCCGATGTGTCAGGAAGCAATCTTGTTAGCGGAGTGGTTCCCACCATTTCACCCAGGTGA
AA sequence Show only first row Show all	>Lus10019114 pacid=23141834 polypeptide=Lus10019114 locus=Lus10019114.g ID=Lus10019114.BGIv1.0 annot-version=v1.0 MCSVRKASSLVGALLLTCLYCSAPFAAAQSITDPVEVKALGDVHRSLIDINKNLSNWNRGDPCTSNWTGVLCFNSPMDDGYLHVRELQLIDMNLTGTLSP SLGEFSYMRILDVMWNNISGSIPKEIGNIKSLELLLLNGNNLTGSLPEELGYLPNLDRIQIDQNHISGTIPKSFAFLNKTQHFHMNNNSISGQIPPELSR LPNLLHFLLDNNDLTGYLPPEFSELPRILILQLDNNNFEGTSIPPSYSNMTKLLKLSLRNCSLEGPIPDLSRIPDLGYLDLSSNELNGTIPSNKLSDNIT TIDLSNNNLVGTVPPSFSGLPLLQILSLANNSLNGSIPSNIWQSRSNSGSRGLVLDLENNGFSDIAGATTLPPNVTLWLQGNPACSNSSLVKFCGAPVID LNKPNSTNSTSACPVQACPAPFEYSPTSSTSCFCAAPLIIGYRLKSPGFFDFRPYKDAFEWYLTDGLRVQLSQLDLNQFSWEKGPRIRMHLKIFPVYNPN SNTSHLFNNSEARRIVNMFTGWNIPDSEIFGPYELLYLTLLDPYRNVIDGGSDKSGISKGAVAGIVLGAIAGAVTVSAILTLLIVRTQMRKYRVVSKRRH PSKASIRIEGVKGFTYAEMALATHNFSNSAQVGQGGYGKVYRGVMAEGTLVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVSLTGYCDEEGEQMLVYE FMPNGTLRDHLSGKTKEPLSFATRVRVALGSAKGILYLHTEADPPIFHRDIKASNILLDNRFNAKVADFGLSRLAPVPDLEGAVAAHVSTVVKGTPGYLD PEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNMAYQSGMIFSVIDDKMGSYPSDCVEKFLTLALKCCKDETDSRPSMAEVVRELETIWS FLPESETKTSESVTTKDTDSKMADGSTPPSSASSSLKNPYVSSDVSGSNLVSGVVPTISPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	0	1
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	1.0	0.9660
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	3.9	0.9601
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	6.7	0.9561
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	8.1	0.9615
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	8.5	0.9601
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	9.8	0.9347
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	13.9	0.9574
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	15.2	0.9606
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	16.1	0.9550
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10013887 [exp]	16.9	0.9427

Compare expression of checked genes

Lus10019114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.