Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30530 256 / 1e-81 unknown protein AT5G01970 224 / 1e-69 unknown protein AT1G30050 194 / 1e-57 unknown protein AT4G02800 107 / 6e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034444 [exp] 535 / 0 AT2G30530 268 / 3e-86 unknown protein Lus10035153 [exp] 353 / 2e-118 AT5G01970 264 / 8e-85 unknown protein Lus10031947 [exp] 313 / 7e-104 AT5G01970 263 / 1e-85 unknown protein Lus10035609 [exp] 140 / 1e-37 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 123 / 4e-30 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10022037 [exp] 107 / 1e-25 AT4G02800 276 / 1e-91 unknown protein Lus10014668 [exp] 99 / 8e-23 AT4G02800 262 / 1e-85 unknown protein Lus10000658 [exp] 98 / 2e-22 AT4G02800 266 / 1e-87 unknown protein Lus10042577 [exp] 44 / 7e-05 AT4G02800 109 / 1e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G132300 [exp] 327 / 7e-108 AT2G30530 253 / 9e-80 unknown protein Potri.013G160100 [exp] 314 / 9e-103 AT2G30530 266 / 8e-85 unknown protein Potri.006G111900 [exp] 242 / 1e-74 AT5G01970 352 / 2e-118 unknown protein Potri.016G141300 [exp] 232 / 2e-71 AT5G01970 353 / 2e-119 unknown protein Potri.002G053100 [exp] 102 / 6e-24 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 99 / 1e-22 AT4G02800 291 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019115 pacid=23141711 polypeptide=Lus10019115 locus=Lus10019115.g ID=Lus10019115.BGIv1.0 annot-version=v1.0 ATGGCGTACAGACGACGAGGTCAGCCATCCCCTTCGTCTTCTTTCTATTACTCCTACGACAATCACAGAAACGGAAACGAAGAAGAAGAATCAGCACCGC CGCAAGATTCCACTGAACTTGCCGCCAAAGCCATCCGAGCATCCTCCGCCGCCAAAACCCTCCGTGACTCCTCCCTTTCCTCCGCTTACTATGCCTTCCC TCCCTCTCCTTCCTCCTCCTCCTCTGCTCCTCCTTCCAAGGCGCAGGATGCTCCCCACTCTTATACCTCGATGAACAGCTTCAAGCAGTCCAATCCTGAT CCCAAGCCAGGTGGGTTTTGGGGAACTCTTGCTAGGAAGGCTAAATCGTTCCTCGATGATGATGATTATGACAATGAATATCAACGTCATCATCATCAGC AGTTCCCGCAGCATCCGTACCGACAAGAAAGGCCTCAACAGCAAACGCACTCTCCTCAGAAGAATCCGCAATCGCAGTCTGATCCCTCCCCTACCTCTTT ACCAAAGAATGATGCTCGTCCTGTTCCCCTTAATGAAAGCAGTAGAAAGAAAGAATTGCGCAAGGGGCTCAACGCGATTTCTTTTTCGCTTAACTATATT GGCAATGCTGTTGAGGAGGGCCTCACGAAAGTGGAGAACCGAACAGCCGACATTATCGAAGGAACACGTAAGCATATCAGGAAAAAACCCGGTGGTACTT CTGCACCGAACCAGACAACCAATCAAAGTACTGCAAGGCAACAACCTCAAGTCCCGCCACAGGTGCAGCCCCAGACGCTAGCTGATTTGGAGCTTCAACT GAAGGCATCTCGTGACGTTGCGATGGCAATGGCTGCTAAAGCAAAATTACTGCTTCGAGAGCTGAAATCTGTAAAAGCGGATTTGACTTTTTCCAAGGAA AGGTGTGCTCAGCTGGAGGAGGAAAATAAGATCCTCAGGGAGAATCGTGAAAGAGGAGGTAACCTGGAAGACGATGACATGATTCGCCTTCAACTGGAGA CTCTGCTAGCAGAGAAGGCACGTTTGGCACATGAGAACTCGGTATTTGCAAGAGAAAACCGATTCTTGAGGGAAGTAGTGGAGTATCACCAGCTTACAAT GCAGGATGTAGTGTACTTGGACGAATGTACTGAAGAAGTAAAAGAAGTATACCCCATTAAGGTAGTGACAAACACCACCACCCCCACCAATGGGCTCGCC GAGACGTTGGTGCACCCTGTGCCACCACCCGGACTGGGGCTCGAAATAGACAAAGCTTCCCGACACCAAGTTCATAATATGCCCCCCTCTTGA
AA sequence Show only first row Show all	>Lus10019115 pacid=23141711 polypeptide=Lus10019115 locus=Lus10019115.g ID=Lus10019115.BGIv1.0 annot-version=v1.0 MAYRRRGQPSPSSSFYYSYDNHRNGNEEEESAPPQDSTELAAKAIRASSAAKTLRDSSLSSAYYAFPPSPSSSSSAPPSKAQDAPHSYTSMNSFKQSNPD PKPGGFWGTLARKAKSFLDDDDYDNEYQRHHHQQFPQHPYRQERPQQQTHSPQKNPQSQSDPSPTSLPKNDARPVPLNESSRKKELRKGLNAISFSLNYI GNAVEEGLTKVENRTADIIEGTRKHIRKKPGGTSAPNQTTNQSTARQQPQVPPQVQPQTLADLELQLKASRDVAMAMAAKAKLLLRELKSVKADLTFSKE RCAQLEEENKILRENRERGGNLEDDDMIRLQLETLLAEKARLAHENSVFARENRFLREVVEYHQLTMQDVVYLDECTEEVKEVYPIKVVTNTTTPTNGLA ETLVHPVPPPGLGLEIDKASRHQVHNMPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30530			unknown protein		Lus10019115 [exp]	0	1
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	1.0	0.9185
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	4.0	0.8804
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	11.6	0.8722
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10004358 [exp]	15.3	0.8579
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	15.5	0.8773
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	22.1	0.8733
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	26.5	0.8517
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	28.2	0.8923
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	37.8	0.8533
AT5G57950			26S proteasome regulatory subu...		Lus10036267 [exp]	40.2	0.8107

Compare expression of checked genes

Lus10019115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.