Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38610 248 / 3e-82 RNA-binding KH domain-containing protein (.1.2) AT3G08620 244 / 1e-80 RNA-binding KH domain-containing protein (.1) AT4G26480 217 / 9e-70 RNA-binding KH domain-containing protein (.1) AT5G56140 214 / 2e-68 RNA-binding KH domain-containing protein (.1) AT1G09660 189 / 3e-59 RNA-binding KH domain-containing protein (.1.2) AT5G51300 103 / 9e-25 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034443 [exp] 395 / 7e-140 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 313 / 9e-108 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 311 / 6e-107 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 259 / 2e-86 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 259 / 2e-86 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 207 / 4e-66 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 207 / 7e-66 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 100 / 9e-24 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10013751 [exp] 41 / 0.001 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159800 [exp] 266 / 2e-89 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 264 / 1e-88 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 253 / 3e-84 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.006G111400 [exp] 253 / 3e-84 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.001G471000 [exp] 213 / 2e-68 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.011G168000 [exp] 207 / 4e-66 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.003G005500 [exp] 206 / 8e-66 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 206 / 2e-65 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.003G107200 [exp] 100 / 6e-24 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 100 / 9e-24 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10019116 pacid=23141783 polypeptide=Lus10019116 locus=Lus10019116.g ID=Lus10019116.BGIv1.0 annot-version=v1.0 ATGTCTGGACTGTACGCTCACAATTTCTCGCCTTCTACTGCAACTCCGCAGCCATCTGCCGCCGCAGCAGCCTCCCCTCATAATCTTCATCATCATCGAC AACAACAGCAGCATCACCATCTTCATAATCTTGAGAATATCGCGAGCCAGCCCCAAGGATTCAGCCCCTTTGGATCACTTCATCAACTCCCATCCCTGAG TCCGCGGCGGACTGAAGATCCATCCTGGAATTCCCCTCTCCCTCCCCAGAGATTCGGAACAGAGGGGGTGAACATGGATTGGCAAGCTCCACCAACAAGC CCAAGTTCTTATGCTGTGAAGAAGATCTTACGCTTGGATATTCCCATTGATAGCTTCCCAAATTTCAATTTTGTAGGTCGGCTCCTTGGACCAAGAGGGA ACTCCCTTAAACGTGTTGAAGCTACTACTGGCTGCCGTGTCTTCATTAGAGGGAAGGGTTCGATAAAGGATACCGAGAAGGAGGACACGCTGAGGGGAAG GCCAGGATATGAGCATTTGAGCGAACCTCTTCACATTTTGATCGAGGCTGAATTACCAGTTAACATTGTGGACATGCGATTAAGACAAGCCAAGGAGATC ATTGAAGAAGTGCTTAGACCTGTGGACGAGGCGCAGGATCTGTATAAGAGGCAACAACTGAGGGAGCTAGCGCTGCTAAACTCGAGCTACAGAGAAGAAA GCCCTGGACCAAGCGCAAGTGGTAGCGTCTCTCCTTTCTCGTCAAATATTATTGGAATGAAGCGTGCTAAAATGGGTCAATAG
AA sequence Show only first row Show all	>Lus10019116 pacid=23141783 polypeptide=Lus10019116 locus=Lus10019116.g ID=Lus10019116.BGIv1.0 annot-version=v1.0 MSGLYAHNFSPSTATPQPSAAAAASPHNLHHHRQQQQHHHLHNLENIASQPQGFSPFGSLHQLPSLSPRRTEDPSWNSPLPPQRFGTEGVNMDWQAPPTS PSSYAVKKILRLDIPIDSFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDTEKEDTLRGRPGYEHLSEPLHILIEAELPVNIVDMRLRQAKEI IEEVLRPVDEAQDLYKRQQLRELALLNSSYREESPGPSASGSVSPFSSNIIGMKRAKMGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	0	1
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036221 [exp]	2.0	0.7985
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	4.0	0.8102
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	8.5	0.7723
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	9.9	0.7789
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	12.0	0.8213
					Lus10017937 [exp]	21.6	0.7951
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	22.4	0.8024
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	29.4	0.7748
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	29.6	0.6637
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	32.1	0.7956

Compare expression of checked genes

Lus10019116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.