Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10860 347 / 2e-123 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 182 / 3e-58 Cystathionine beta-synthase (CBS) family protein (.1) AT3G52950 56 / 5e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 54 / 1e-08 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 53 / 4e-08 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 53 / 4e-08 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 52 / 1e-07 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT4G36910 40 / 0.0004 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034441 [exp] 405 / 3e-142 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 347 / 2e-123 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 343 / 6e-122 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 195 / 4e-63 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10032625 [exp] 51 / 2e-07 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10043123 [exp] 51 / 2e-07 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10035965 [exp] 48 / 2e-06 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10025698 [exp] 48 / 2e-06 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10002834 [exp] 44 / 4e-05 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161500 [exp] 352 / 3e-125 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 334 / 2e-118 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 225 / 4e-75 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.002G034800 [exp] 100 / 7e-27 AT1G47271 102 / 4e-28 Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G070500 [exp] 54 / 2e-08 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.015G098100 [exp] 51 / 2e-07 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.012G099600 [exp] 50 / 2e-07 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.007G098400 [exp] 49 / 8e-07 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.017G053600 [exp] 42 / 0.0001 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.001G303900 [exp] 40 / 0.0004 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10019117 pacid=23141781 polypeptide=Lus10019117 locus=Lus10019117.g ID=Lus10019117.BGIv1.0 annot-version=v1.0 ATGCAAGGCGCAGTTCAAGGTTTCTTCTCCCGCGCAGGATTCGTCAAGGCCTCAGTGCTGCAGCACGTCCGGGTCCTGAACCATGCTCTCCGTCCGCTCG TTTTCTCCCGATCGGAGTCTGTATCGCCGGCGAGGATCGAGGAGCATGGCTTCGAGAACACAACGATCGCCGATGTGTTGACCTCCAAAGGTAAGGCTGC TGATGGCTCCTGGCTCTGGTGCACCGTCGAAGACTCTGTTTACGACGCTGTCCAGTCGATGACGCAGCACAATGTTGGTGCCTTGGTGGTTGTGAAACCC GGACAGCAGAAATCAATTGCTGGTATCATCACCGAGAGAGACTACTTGCGGAAGATCATAGTGCAGGGCAGATCATCCAAGTCAACCAAGGTTGGAGATA TTATGACCGAAGAGAACAAGCTTATCACAGTGACGCCTGACACCAAAGTTCTGCGGGCAATGCAGCTGATGACCGATAACCGCATCAGGCACATCCCAGT CATCAACGACAAGGGAATGATCGGCATGTTGTCCATCGGCGATGTTGTTCGTGCTGTGGTGAGCGAGCACCGCCAGGAGTTGGACCGGCTCAACGCCTAC ATACAAGGAGGTTATTAG
AA sequence Show only first row Show all	>Lus10019117 pacid=23141781 polypeptide=Lus10019117 locus=Lus10019117.g ID=Lus10019117.BGIv1.0 annot-version=v1.0 MQGAVQGFFSRAGFVKASVLQHVRVLNHALRPLVFSRSESVSPARIEEHGFENTTIADVLTSKGKAADGSWLWCTVEDSVYDAVQSMTQHNVGALVVVKP GQQKSIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDKGMIGMLSIGDVVRAVVSEHRQELDRLNAY IQGGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	2.0	0.9397
					Lus10022017 [exp]	2.2	0.9400
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10040401 [exp]	2.2	0.9215
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	3.7	0.9043
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	6.5	0.9232
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Lus10028533 [exp]	7.5	0.8739
AT2G37480			unknown protein		Lus10024420 [exp]	8.7	0.8986
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	9.5	0.8990
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	9.5	0.9040
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	9.9	0.9079

Compare expression of checked genes

Lus10019117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.