Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80150 449 / 2e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 179 / 7e-53 PPR336 pentatricopeptide repeat 336 (.1) AT3G13160 169 / 8e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 165 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 159 / 4e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 157 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 159 / 4e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 145 / 8e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 110 / 2e-26 RPF2 rna processing factor 2 (.1) AT5G39710 108 / 8e-26 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032338 [exp] 576 / 0 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 574 / 0 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 519 / 0 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020055 [exp] 175 / 4e-51 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10020073 [exp] 155 / 2e-43 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 150 / 7e-42 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 148 / 3e-41 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 148 / 5e-41 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006769 [exp] 135 / 4e-37 AT1G61870 326 / 7e-111 pentatricopeptide repeat 336 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062700 [exp] 499 / 7e-178 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 479 / 4e-170 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 182 / 5e-54 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 175 / 2e-51 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 155 / 1e-43 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.011G001100 [exp] 154 / 4e-43 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1) Potri.011G032400 [exp] 153 / 6e-43 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 153 / 8e-43 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 152 / 1e-42 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 147 / 1e-40 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019119 pacid=23141752 polypeptide=Lus10019119 locus=Lus10019119.g ID=Lus10019119.BGIv1.0 annot-version=v1.0 ATGGAGGAACCTGCTCTTGTCAAGCTTAAATGTGAGAGAGATCCTGTAAAGCTATATAATCTTTTCAAGGCCAATGCTAGGAATAGGCTTATAATTGAGA ACCGGATTGCATTTGAAGACACTATCTCGCGCTTAGCTGGGGCAAAAAGATTTGATTACGTTGAGGATTTACTTGAGCAGCAAAAGTCTCTTCCACAAGG CAGTAGTGAAGTCTTTATTGTGAGGATTATAATATTGTATGGAAAAGCTGGGATGGCGAAGCATGCCCTCAATACTTTCTATGATATGCATCAGTCGAAT GGAACGGCCAAGTCATTCAATGATGCACTTAAGGTATTGACAACAACACGTGACACAGCAGCGATCGAAGCATTTCTGAGCGAGGTACTCGAGAAGTATG AGATAGAATTAGATTTATATACTTTGAACATTGTTATGAAGGCCTTCTGCGATATGGAGAATTTGGATCAGGCAATATTGGTCATGGTACGGATGGAAAA GTTTGGAATAAAGCCAGATGTGATAACATACACCATACTCATCGCAGCATTTTACAGAAACAATAGGTTCGAACTTGGTAATGGTTTGTGGAATCTAATG GTACTTAAGGGCTGCTTCCCAAATCTTGCAACTTTCAATGTTAGAATACAGTACTTGGTGAATACAAGACACGCATGGAAAGCAAATGATGTGATGCTTC TGATGCAGAAAGTTGGTATTTTTCCAGATGAGATCACTTATAACTTAGTCATCAAAGGTTTTTTTCAGGCTGGATACCCTGAGATGGCAAAAAGGGTATA TTCTGCACTGCATGGAAGGGGATTTAAACCCAATGTTAAGATATACCAGACGATGGTTCATTATTTGTGCAAGGGTGGGGAACTTGATTTGGCTTATACA TTATGTACAAAGTGTATGAAAAAGAAATGGTTCCCGAGTGTGGACTCCATCTGTGGACTTCTTCATGCCTTGAAGAAGAATGGGAAGTTGGGGAAGGCTA GGATGATCATGGCATTAGTAGGAGGAAGTTTCCTCCATTCTCTTCAAACCAATTAA
AA sequence Show only first row Show all	>Lus10019119 pacid=23141752 polypeptide=Lus10019119 locus=Lus10019119.g ID=Lus10019119.BGIv1.0 annot-version=v1.0 MEEPALVKLKCERDPVKLYNLFKANARNRLIIENRIAFEDTISRLAGAKRFDYVEDLLEQQKSLPQGSSEVFIVRIIILYGKAGMAKHALNTFYDMHQSN GTAKSFNDALKVLTTTRDTAAIEAFLSEVLEKYEIELDLYTLNIVMKAFCDMENLDQAILVMVRMEKFGIKPDVITYTILIAAFYRNNRFELGNGLWNLM VLKGCFPNLATFNVRIQYLVNTRHAWKANDVMLLMQKVGIFPDEITYNLVIKGFFQAGYPEMAKRVYSALHGRGFKPNVKIYQTMVHYLCKGGELDLAYT LCTKCMKKKWFPSVDSICGLLHALKKNGKLGKARMIMALVGGSFLHSLQTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	0	1
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	1.0	0.9361
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	2.0	0.9238
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	2.8	0.9188
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	3.2	0.8989
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	4.2	0.9053
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	4.5	0.9109
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	4.6	0.9189
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	4.9	0.8982
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	5.7	0.8986
AT1G73020			unknown protein		Lus10009732 [exp]	6.3	0.9016

Compare expression of checked genes

Lus10019119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.