Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58270 146 / 7e-41 ABCB25, ATATM3, STA1 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) AT4G28630 117 / 8e-31 ABCB23, ATATM1, ATM1 ATP-binding cassette B23, ABC transporter of the mitochondrion 1 (.1) AT4G28620 105 / 2e-26 ABCB24, ATATM2, ATM2 ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 2, ATP-binding cassette B24, ABC transporter of the mitochondrion 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034441 [exp] 253 / 5e-83 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160500 [exp] 168 / 9e-49 AT5G58270 1048 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) Potri.019G132800 [exp] 166 / 4e-48 AT5G58270 1002 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019120 pacid=23141832 polypeptide=Lus10019120 locus=Lus10019120.g ID=Lus10019120.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCCCGCAGAGCAGCTGCAATTGCGACGTGCAAGCTCTGCAAATCAGCTTCTTCTGCCAGAAGGCTCATTCCCTGCAGCAATCAATCTTTCT CCTCCCGCAATTTGAGATTGAATGGCCGAGTTTGCTACTCCAGCTCTACTGCTGCTGCTAGTAGTAGTAATACCGCTCCAAGCAGGGATGCCAATGGCTC GCCGGTGGCTTCTCCTAAATCTCAGCAGGAGCAGGTCGCCGACACGAAAATCATCCAGACTCTGGTTTCTTACTTGTGGATGAAGGATAACTTTGAATTC CGATTGAGGGTCATCGCTGCTCTTGGATTTCTTGTTGGGGCTAAGGTCTTGAACGTTCAAGTGCCTTTCCTTTTCAAGCTTGCGGTTGATTGGTTGACCA TTGCCACTTCCAATGCCCCGGGGCTTGCTTCCTTTACTGCTTCCAATTCAACTCTCATGCTTATGTTTGCTACCCCTGCCTCTGTTCTCGTTGGATATGG AATAGCTCGCTGCACAGCGGCTGCTTTCAATGGTCTGTTTGTGTTTTTCTTCTAG
AA sequence Show only first row Show all	>Lus10019120 pacid=23141832 polypeptide=Lus10019120 locus=Lus10019120.g ID=Lus10019120.BGIv1.0 annot-version=v1.0 MAAARRAAAIATCKLCKSASSARRLIPCSNQSFSSRNLRLNGRVCYSSSTAAASSSNTAPSRDANGSPVASPKSQQEQVADTKIIQTLVSYLWMKDNFEF RLRVIAALGFLVGAKVLNVQVPFLFKLAVDWLTIATSNAPGLASFTASNSTLMLMFATPASVLVGYGIARCTAAAFNGLFVFFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Lus10019120 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	8.1	0.9128
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	9.9	0.9127
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	10.5	0.8939
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	11.5	0.8996
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	17.1	0.8505
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	17.7	0.9116
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10031050 [exp]	28.6	0.8749
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	31.9	0.8782
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	35.3	0.8905
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	40.5	0.8737

Compare expression of checked genes

Lus10019120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.