Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 155 / 2e-44 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 154 / 3e-44 DEA(D/H)-box RNA helicase family protein (.1) AT2G37920 82 / 9e-20 EMB1513 embryo defective 1513, copper ion transmembrane transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034440 [exp] 209 / 1e-70 AT1G63250 161 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1) Lus10002043 [exp] 86 / 3e-20 AT2G37920 259 / 4e-84 embryo defective 1513, copper ion transmembrane transporters (.1) Lus10024339 [exp] 85 / 6e-20 AT2G37920 245 / 8e-79 embryo defective 1513, copper ion transmembrane transporters (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107300 [exp] 151 / 3e-43 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 134 / 4e-37 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G092100 [exp] 85 / 3e-20 AT2G37920 243 / 1e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.016G103600 [exp] 84 / 5e-20 AT2G37920 250 / 4e-82 embryo defective 1513, copper ion transmembrane transporters (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019121 pacid=23141808 polypeptide=Lus10019121 locus=Lus10019121.g ID=Lus10019121.BGIv1.0 annot-version=v1.0 ATGCAATTGGGCAGGGTTTCCGGTCTCCTCGGCAGCCGCCTCTTCGTCCGATTCATGGGCGGAGGGCCACGTACATTCCCCGGCGGCTTAAACAAGTGGC AGTGGAAGCGTATGCACGAGAAGCAAGCTCGAGAGAAGGAAAAACGCCTCCTTGACCAGGAAAAGCAACTCTACCAAGCCAGAATACGATCCCAAATCCG GTCCAAACTTGTCGATGGAGACCCCGATAGCATCGAATCCTCCTCCGGCTCTGCTGCTGCTTCCGGTGCCAATTATAACCCCATGACTCCCAAAGACCAC GTCAAAGCTCTAGCTGATCGTTTCATGAAGGAAGGAGCTGAGGATTTGTGGAATGAGGATGATGGCCCTTTGCAAACCCCACTCCCAAGATCAGCTGAAC GTTTTGAGATGACGAATCATGAACATCGGTTAATTTGA
AA sequence Show only first row Show all	>Lus10019121 pacid=23141808 polypeptide=Lus10019121 locus=Lus10019121.g ID=Lus10019121.BGIv1.0 annot-version=v1.0 MQLGRVSGLLGSRLFVRFMGGGPRTFPGGLNKWQWKRMHEKQAREKEKRLLDQEKQLYQARIRSQIRSKLVDGDPDSIESSSGSAAASGANYNPMTPKDH VKALADRFMKEGAEDLWNEDDGPLQTPLPRSAERFEMTNHEHRLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	0	1
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	2.6	0.7130
AT2G16940			Splicing factor, CC1-like (.1....		Lus10025075 [exp]	10.2	0.5750
AT5G10990			SAUR-like auxin-responsive pro...		Lus10026297 [exp]	13.3	0.6089
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	14.4	0.6582
AT1G12400			Nucleotide excision repair, TF...		Lus10000383 [exp]	22.9	0.6578
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	28.0	0.6305
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	31.6	0.6141
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	33.3	0.6561
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	45.9	0.5903
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	50.5	0.6098

Compare expression of checked genes

Lus10019121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.