Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58260 204 / 2e-67 NdhN NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034438 [exp] 259 / 1e-88 AT5G58260 286 / 7e-99 NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160600 [exp] 218 / 2e-72 AT5G58260 280 / 3e-96 NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11909 [flax] [poplar] NdhN NADH-quinone oxidoreductase cyanobacterial subunit N
Representative CDS sequence Show only first row Show all	>Lus10019123 pacid=23141764 polypeptide=Lus10019123 locus=Lus10019123.g ID=Lus10019123.BGIv1.0 annot-version=v1.0 ATGTCGGACGTGGAAGAGCACAAATCCCTCGCCATTTATCCGCCTCACGAGGGAGGCTACGAAGGTCGCTACTTCACTAAGCTTAGATATGACGGCTACT TCTTCCTCGATGTCTCAGCTCGTGGACTAGGCGACCCCGAGTCCACCCTCACCAAAGTCCATCCCGTTTGCCCCGCGAATTTGGGGAAGCAACCTATTGC TCGGTGGTATTTCCCGCCGAAGGTTGATTATAGACTTGCTGTGCTTCCCTCCGATGCTAAAGGACTCGTCATCTGGGTCACCGAAGCCAAGGTTCTATCC AAGGCAGAGCTGCAGTTCCTGGCATTGCTTCCAACCCTCCGCCCAAAGTCCGCGTCATTGCTGAATGCGGAAACTGGTAAAAAATTCATGATCATACCTC TCTGTCTGATAGAAACTTTACCTGAGATTCATTCTTGTATGGTGTGTGGTGGTGATGTGTTCAGGAGGCAGTTTGTGTGGAAGCCGCTCAAAGAGATTGC TGGACTAACCACTCAGACTGAGGTTGCCGCCTGA
AA sequence Show only first row Show all	>Lus10019123 pacid=23141764 polypeptide=Lus10019123 locus=Lus10019123.g ID=Lus10019123.BGIv1.0 annot-version=v1.0 MSDVEEHKSLAIYPPHEGGYEGRYFTKLRYDGYFFLDVSARGLGDPESTLTKVHPVCPANLGKQPIARWYFPPKVDYRLAVLPSDAKGLVIWVTEAKVLS KAELQFLALLPTLRPKSASLLNAETGKKFMIIPLCLIETLPEIHSCMVCGGDVFRRQFVWKPLKEIAGLTTQTEVAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	0	1
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	3.5	0.8953
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	4.0	0.8838
AT3G56160			Sodium Bile acid symporter fam...		Lus10019540 [exp]	5.3	0.8752
AT1G54680			unknown protein		Lus10018965 [exp]	5.8	0.8909
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	6.3	0.8481
AT2G23390			unknown protein		Lus10010689 [exp]	7.7	0.8618
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	9.6	0.8385
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	12.5	0.8578
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	13.7	0.8626
AT5G27290			unknown protein		Lus10018966 [exp]	15.3	0.8834

Compare expression of checked genes

Lus10019123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.