Plant FIBer expression Database

Lus10019124 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51340 850 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G133000
[exp]
1068 / 0 AT5G51340 975 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF10345 Cohesin_load Cohesin loading factor
Representative CDS sequence
>Lus10019124 pacid=23141707 polypeptide=Lus10019124 locus=Lus10019124.g ID=Lus10019124.BGIv1.0 annot-version=v1.0
ATGGAAGCTGTGGCGGAAGGGCTGTGGGGATTAGCAGACTACCACGAGAAGAGAGGCGAGGTAGCCAAATCAATCAAGTGTTTGGAAGCAATTTGCCAGT
CTAAGACCCCATTCTTGCCCATCATCGAGGTCAAAACCCGTCTACGCCTCGCCACTCTCCTTCTCAAGCACACTCATAACGCCAATCACGCCAAATCCCA
CCTTGAGCGCTCTCAGCTCCTCCTGAAATCAATCCCTTCCTGCTTCGACTTGAAATGTCGCACCTACAGCTTGTTGAGCCAGTCTTATCATCTAGTCGGC
GCAATCCATCCCCAGAAACAGATCCTCCACAAGGCCCTTGACCTCGCTGCTTCTGCTGCTCCTGAAGTTTCTTCAAACCTATGGGCTTGCAACTTTAATT
CCCAGCTCGCCAATGCTTTGATTATTGAAGGAGACTGTAACTCTGCCTTCTCCGCCTTGGAGTCTGGTTATGCTTCTGCTACTCAACTATGTTATCCCCA
ATTACAGATGTTCTTCGCGACGTCTATCCTTCATGTGCACCTTATGCAATGGCATGATGATAACTTGGTTCAGAGTGCTCTTCACAGGTGCGATGAGATT
TGGGGCTCGTTATCCCCAGATATAAGGGAACAATGTACAGGTTTGCTCTTTTACAATGAGCTCCTGCACATATTCTATCAGCTCCGCATCTGTGATTACA
AGAATGCCACCAAGCATGTAGACAAGCTGGATGCTGCGATGAAGGCTGACTTACAGAAAACGAGAGAAATACAGCGGCTTTCGAATGAACTTGATGCTGT
CAGTCAAAGTCTGTCGATGTCTGACTTACCCAGGAGAGACAGGTCATTACTCTCTAAGAAGAAAGATCATCTTGAAGAGCAGATTACAAGTCTTAATGGG
AGATCATCAATAGAGCAACCCCTAGAACCTGCCTACTTTGGGAATGCGACTCGTGCATTGCAAGATAAGCTTGTCCTGGCACCTCCCCCTATTGACGGGG
AATGGCTGCCTAAAAGTGCTATCTACTCTCTGGTTGACCTTATGGTGGTTGTGTTCGGCCGTCCAAGAGGGCTTTTCAAGGAATGTGCAAAGCGAATTCA
ATCTGGGATACAAACTATTCAAGGAGAGTTGGTAAAACTTGGGATCAATGAAGGTGTTAGAGCAGAGGTGGATTTGCAGCACTCATCTATTTGGATGGCT
GGGGTATATTTGATGTTGTTAATGCAGTTTCTGGAAAACAATGTTGCCATGGAGCTTACTCGGTCTGACTTCGTTGCTGCACAAGAAGCATTGCTGCAGA
TGAAAGATTTCTTTGTTCGCTTTCCAACTATCTTACTAGGATGTGAGAGTGTGATTGAGGTGCTTAGGGGCCAATATGCTCATTATGTTGGTTGTTACAG
TGAAGCAGCTTTCCATTTTGTTGAAGCAGCAAAGATGACGGAGAGCAAATCTGTGCAAGCTATGTGCCACATATATGCTGCTGTCTCTTATATCTGCTGT
GGTGATGCTGAATCATCAGCACAGGCACTTGATTTGATTGGACCAGTTTATAGAATGAAAGATTCTTTTGTTGGAGTGAGGGAGCAAGCAAATGTCCACT
TTGCATATGGCATTTTATTGATGAGGCAGGACGATTACGAAGAAGCACGAGTTAGGTTGGCTAAAGGATTGCAGATTACACATTCCAGCTTGGGGAATTT
ACAACTCATTTCACAGTACTTGACCGTTCTTGGGCATTTGGCACTTTCCCTGCATGATACTGTACAAGCAAGGGAAATTTTGAGATCTGCCCTTACGCTG
TCGAAAAAGCTTTATGATGTCCCTTCGCAGATATGGGTTCTTTCTGTTCTTACAGAATTGTACCAAGGTTTAGGTGAGGTTGGAAATCAGATGGAGAATG
AGGACTACCTGAAGAAGAAGTCAGATGAGCTGCAGAGGAAACTCGGCGATGCACATTCATCCATGCACCACATTGAACTGGCTCAAGCTCCAGAGTTTGT
GCATAACATTAACAGGGAAATGTATCTAGGTTGTATGTAA
AA sequence
>Lus10019124 pacid=23141707 polypeptide=Lus10019124 locus=Lus10019124.g ID=Lus10019124.BGIv1.0 annot-version=v1.0
MEAVAEGLWGLADYHEKRGEVAKSIKCLEAICQSKTPFLPIIEVKTRLRLATLLLKHTHNANHAKSHLERSQLLLKSIPSCFDLKCRTYSLLSQSYHLVG
AIHPQKQILHKALDLAASAAPEVSSNLWACNFNSQLANALIIEGDCNSAFSALESGYASATQLCYPQLQMFFATSILHVHLMQWHDDNLVQSALHRCDEI
WGSLSPDIREQCTGLLFYNELLHIFYQLRICDYKNATKHVDKLDAAMKADLQKTREIQRLSNELDAVSQSLSMSDLPRRDRSLLSKKKDHLEEQITSLNG
RSSIEQPLEPAYFGNATRALQDKLVLAPPPIDGEWLPKSAIYSLVDLMVVVFGRPRGLFKECAKRIQSGIQTIQGELVKLGINEGVRAEVDLQHSSIWMA
GVYLMLLMQFLENNVAMELTRSDFVAAQEALLQMKDFFVRFPTILLGCESVIEVLRGQYAHYVGCYSEAAFHFVEAAKMTESKSVQAMCHIYAAVSYICC
GDAESSAQALDLIGPVYRMKDSFVGVREQANVHFAYGILLMRQDDYEEARVRLAKGLQITHSSLGNLQLISQYLTVLGHLALSLHDTVQAREILRSALTL
SKKLYDVPSQIWVLSVLTELYQGLGEVGNQMENEDYLKKKSDELQRKLGDAHSSMHHIELAQAPEFVHNINREMYLGCM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51340 Tetratricopeptide repeat (TPR)... Lus10019124
[exp]
0 1
AT1G45231 S-adenosyl-L-methionine-depend... Lus10009752
[exp]
3.6 0.8819
AT5G15270 RNA-binding KH domain-containi... Lus10005232
[exp]
5.3 0.8816
AT4G27510 unknown protein Lus10004528
[exp]
5.9 0.8610
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10020235
[exp]
6.0 0.8684
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10003491
[exp]
8.7 0.8642
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10026862
[exp]
8.9 0.8672
AT5G46400 ATPRP39-2 ,AT P... Tetratricopeptide repeat (TPR)... Lus10015257
[exp]
12.3 0.8589
AT5G01110 Tetratricopeptide repeat (TPR)... Lus10018113
[exp]
13.0 0.8348
AT2G19430 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein... Lus10027630
[exp]
13.2 0.8632
AT1G48170 unknown protein Lus10022783
[exp]
15.2 0.7769

Lus10019124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.