Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23630 184 / 4e-57 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT2G46170 178 / 6e-55 Reticulon family protein (.1.2) AT4G11220 176 / 6e-54 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT5G41600 175 / 8e-54 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G61560 170 / 6e-52 Reticulon family protein (.1.2) AT1G64090 162 / 8e-49 RTNLB3 Reticulan like protein B3 (.1.2) AT4G01230 148 / 2e-43 Reticulon family protein (.1) AT3G10260 128 / 6e-36 Reticulon family protein (.1.2.3) AT3G18260 110 / 3e-29 Reticulon family protein (.1) AT3G10915 96 / 1e-23 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034437 [exp] 454 / 4e-163 AT4G23630 203 / 3e-64 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10041080 [exp] 183 / 7e-57 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10036405 [exp] 182 / 3e-56 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10027548 [exp] 176 / 3e-54 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 172 / 2e-52 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10028753 [exp] 181 / 2e-51 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10014948 [exp] 169 / 2e-51 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 168 / 3e-51 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10032313 [exp] 167 / 2e-50 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160900 [exp] 228 / 1e-74 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.001G097700 [exp] 192 / 1e-60 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 187 / 2e-58 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 186 / 3e-58 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 182 / 2e-56 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 181 / 2e-56 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 179 / 1e-55 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 155 / 2e-46 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 144 / 4e-42 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.015G044300 [exp] 127 / 1e-35 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10019125 pacid=23141805 polypeptide=Lus10019125 locus=Lus10019125.g ID=Lus10019125.BGIv1.0 annot-version=v1.0 ATGACAGACGCAGTACTGGATCAGCTTGGATCGGAGGTGGTGATGAAAGAGGTGATCGAGAAACAGCAAACGCCGTTATCAGCTCCGATCGCCGCTGATG TCAGCTACGTGGATCACGACATCAACCTCGCCGCCACCGCCGCCTCCTCCGACGCTTCCTCCAACTCCTCCGACTCCGAGATCGACAATTACATCATCAT GTCCCAGTCCGCCGGCAAGAACCGCCTCTTCGGCCGCCAGAAGCCTCTCCACCTGGTCCTCGGTGCCGGCAAACGAGCGGACATAATACTGTGGCGAAAC AAGCAACTGACGGGAGGCATATTCGGCGGAGTAACTTTCGTGTGGCTATGTTTTGAATGGAGAGGATATAATTTAATTACTTTTATTTGCCACTCCCTCA TCTTGCTCCTCGCCATGCTCTTCCTCAGCTCCAATTTAGCCGCCATCATCAACGTGTCTCCAGTTGAATTGCCGAAAGGGGATGTATCAGAGCGCGTAAT CGCGTCTACTCTTATCACCCTCAAATCTCAACTGAACTGCGCAATCTCTACTTTCCGAGATGTTGCATCCGGCAAGGACTTAAAGAAGTTTATCAAGGTT ATAGTGTCGTTATGGATTATCTCTGTAATCGGAAGCTGGTTCAATTTCTTGACTCTGTTTTACCTAGTGCCATTAGCGTATGAGAAGAACGAGGATGTGG TGGATAACCATGCAGAGAAGGCGTGGATAGAGATCAAAAAGCAATACGCAGTACTGGATGACAAGTATCTTCATAAACTCCCATTTTTCTCTTCTCTGAA GGCTCACAAAGAGCATTGA
AA sequence Show only first row Show all	>Lus10019125 pacid=23141805 polypeptide=Lus10019125 locus=Lus10019125.g ID=Lus10019125.BGIv1.0 annot-version=v1.0 MTDAVLDQLGSEVVMKEVIEKQQTPLSAPIAADVSYVDHDINLAATAASSDASSNSSDSEIDNYIIMSQSAGKNRLFGRQKPLHLVLGAGKRADIILWRN KQLTGGIFGGVTFVWLCFEWRGYNLITFICHSLILLLAMLFLSSNLAAIINVSPVELPKGDVSERVIASTLITLKSQLNCAISTFRDVASGKDLKKFIKV IVSLWIISVIGSWFNFLTLFYLVPLAYEKNEDVVDNHAEKAWIEIKKQYAVLDDKYLHKLPFFSSLKAHKEH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10019125 [exp]	0	1
					Lus10023004 [exp]	9.9	0.6385
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	23.4	0.6058
					Lus10002467 [exp]	37.9	0.5873
AT2G38430			unknown protein		Lus10030356 [exp]	42.3	0.5594
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10010099 [exp]	48.2	0.6226
AT1G71080			RNA polymerase II transcriptio...		Lus10032448 [exp]	56.4	0.5944
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	61.4	0.5972
					Lus10023005 [exp]	83.4	0.5505
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034851 [exp]	98.0	0.5793
					Lus10004635 [exp]	180.6	0.5242

Compare expression of checked genes

Lus10019125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.