Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57610 224 / 2e-73 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) AT1G09575 215 / 4e-69 Protein of unknown function (DUF607) (.1) AT2G23790 129 / 4e-35 Protein of unknown function (DUF607) (.1) AT4G36820 120 / 7e-32 Protein of unknown function (DUF607) (.1) AT5G42610 115 / 3e-30 Protein of unknown function (DUF607) (.1) AT5G66650 114 / 1e-29 Protein of unknown function (DUF607) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034435 [exp] 430 / 2e-152 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10016799 [exp] 138 / 2e-38 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 135 / 4e-37 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 125 / 7e-34 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 125 / 8e-34 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 114 / 2e-29 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 112 / 1e-28 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161300 [exp] 275 / 8e-92 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 269 / 2e-89 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.007G031400 [exp] 115 / 6e-30 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 111 / 1e-28 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 110 / 7e-28 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 108 / 2e-27 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10019127 pacid=23141801 polypeptide=Lus10019127 locus=Lus10019127.g ID=Lus10019127.BGIv1.0 annot-version=v1.0 ATGCGGAGGAGATTGTCGTTCCGGCCACCGTCTTGGGCCGCTTCTCTTGGCCAAACTACCTCCTCGCCGCCGCTTCCAACCAATGGATTCGGATTCCATC ACCTTCACTCTCCTCCGTCAGCCTCCTCGTTCTTATTTACTTCGTCTGTTGAATCTTCCGTTCCGCATTTTGGTTACGGCGGACGGCGGAGTCCGGCCGA AACCGTGTTTTTCTCGCCGCGTCTGCTGCAGCTAACTTGTGCTGCATCGTCGTCGTCATTTTCACATTCGTATTCCTCCCGCGCGGATAATGACGGCAAT GTCACACCCCCTCCTCCACCGTCTTCCGATGATGCCGAGGCGGTGAGTTGCACGGAGGCGAAGAGGCTGATGAGATTGGTGAACGTGGAGGCGCTGAAGA GCAAGCTAGGGATGGAAGGGAAAGAGGTCATCCCTTACGCTGACCTCATCGCCGCTTGTCAATCAATGGGTGTAGCCCGTTCTCACGATGAGGCCGTTTC TTTTGCTCGGATCCTCGACGATGCCGGCGTTGTTCTTCTCTTTCGCGATAAGGTCTATCTTCATCCTGATAAGGTGGTGGATCTGATCCGAAGAGCAGTA CCGCTGGCACTAACACCAGACAACGATCCAATGAGGGACGAGCTGAAGATCCTGCGGGAGAAGAAGGAAGACATCGACGTACAAGCTCACAAACAGGTCC GGCGAATCCTCTGGGGAGGATTGGGGCTAGCCGTGGTACAGGTCGCGCTGTTCTTCAGGCTGACATTCTGGGAATTCTCATGGGATGTTATGGAACCCAT TGCATTCTTCACCACCACAAGGACTAACTAA
AA sequence Show only first row Show all	>Lus10019127 pacid=23141801 polypeptide=Lus10019127 locus=Lus10019127.g ID=Lus10019127.BGIv1.0 annot-version=v1.0 MRRRLSFRPPSWAASLGQTTSSPPLPTNGFGFHHLHSPPSASSFLFTSSVESSVPHFGYGGRRSPAETVFFSPRLLQLTCAASSSSFSHSYSSRADNDGN VTPPPPPSSDDAEAVSCTEAKRLMRLVNVEALKSKLGMEGKEVIPYADLIAACQSMGVARSHDEAVSFARILDDAGVVLLFRDKVYLHPDKVVDLIRRAV PLALTPDNDPMRDELKILREKKEDIDVQAHKQVRRILWGGLGLAVVQVALFFRLTFWEFSWDVMEPIAFFTTTRTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	0	1
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	3.6	0.8119
					Lus10026124 [exp]	4.9	0.7828
AT1G30130			unknown protein		Lus10028119 [exp]	6.9	0.7397
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	7.4	0.7729
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	7.9	0.7566
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	11.4	0.7899
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	13.0	0.7725
AT4G36790			Major facilitator superfamily ...		Lus10041712 [exp]	13.0	0.7500
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	13.9	0.7644
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	22.6	0.7199

Compare expression of checked genes

Lus10019127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.