Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034434 [exp] 356 / 5e-115 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161200 [exp] 244 / 2e-72 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0123 [flax] [poplar] HTH PF09382 [flax] [poplar] RQC RQC domain
Representative CDS sequence Show only first row Show all	>Lus10019128 pacid=23141718 polypeptide=Lus10019128 locus=Lus10019128.g ID=Lus10019128.BGIv1.0 annot-version=v1.0 ATGGAACATGATGTATCTCGAGAAGCTTTCGTTTTGATGGCCTGCATTCTATCGTGTAGGGGTAACTGGGGCCTGAATATGCCTGTAGACATTCTCCGTG GTTCCCGAGCAAAAAAAATCGTTGACAACCAATTTCATAAGCTTCCACTTCATGGACTTGGGAAAGAACGTACATCTGATTGGTGGAAATCTTTGGCTTA CCAGTTAATTTCTCATGGAAAAAAAATTATACCTTTTCTCTTAACTTCACAAGATAAGCCATTGATTGTTGATGTGAATAAACCTGCGGTTCTAATCAGC AGTTCGTTTGTCAAACTTCTCATTGTACTGGTGGAGGTTGTTCCGGACATATATAGAACTATCAGTGTTAGCTCAAAAGGGAAAGAGTTCGTTAGTTCTT CCAGACTTGATCATCAACCACCACTGCTTCTACCATTGACCAGTGAAATGACAAACAACGAGGACCATCAAAGAGATACTAATGGAGAGTCGAATGGTTG GTCAGCTACAAAATGTGAGGGATTTTCGAAGGCCGAGTCGCAACTCTACCGTTCACTCTTAGAAGAGAGAGCCAACCTTGCAAGAAGAGTTGGAACTGCT CCATATGCGGTCTGCGGCGATCAAATCATCAAACGACTTGGTCATTTACTGCCATCCACCAAAGCAAGAATAGTGAATGTGGATGGTGTCAATCAGCCTT TTATGCACCTCATTGTTCACAATGTTCCTTTGCGGAACTCCCCTGGTAGAGCTACTTCCATCAAACCGCAAACTGTACTTGAATATCTTCTAGAGGCTGC GCAACAAGGATTGAGCCTTGATTGGACCAGAATTTCTCACAAGGTTGGACTGACAAATGAAATGATCTCTGCTATTCTTCGTGCCATCTCGAAGGTTGGA TCGAGCGAAAAGTTGAAGCCCATCAAAGAGGAATTACTGGAAGAGGCAGGTTTGAGTTTCTATTTGTTTTCTCATGCTGAAGTCCTTCATAATAAAAGCC CTCATGCAGTAAAGTTTGTCACTTGCCAGATAAGTTACACACACATCAAGACTTGTCTTGTAATGCAAAAATCTGGAATGTCTCCGGAGATTGCTCCAAC TCCAGCTCCTGAGAAGATATCTGAATTTCTTTCCACCGACGTTAGTCACAAAGAAGGTGGATCACGTGAAGTTGAAAGTTCAGTAGAGATGATGAATGCT GATGGACTCCCCATAGGAAAGCGTCAGAAGGTAGATGATCCTCAACTGAGTTCCGCATGA
AA sequence Show only first row Show all	>Lus10019128 pacid=23141718 polypeptide=Lus10019128 locus=Lus10019128.g ID=Lus10019128.BGIv1.0 annot-version=v1.0 MEHDVSREAFVLMACILSCRGNWGLNMPVDILRGSRAKKIVDNQFHKLPLHGLGKERTSDWWKSLAYQLISHGKKIIPFLLTSQDKPLIVDVNKPAVLIS SSFVKLLIVLVEVVPDIYRTISVSSKGKEFVSSSRLDHQPPLLLPLTSEMTNNEDHQRDTNGESNGWSATKCEGFSKAESQLYRSLLEERANLARRVGTA PYAVCGDQIIKRLGHLLPSTKARIVNVDGVNQPFMHLIVHNVPLRNSPGRATSIKPQTVLEYLLEAAQQGLSLDWTRISHKVGLTNEMISAILRAISKVG SSEKLKPIKEELLEEAGLSFYLFSHAEVLHNKSPHAVKFVTCQISYTHIKTCLVMQKSGMSPEIAPTPAPEKISEFLSTDVSHKEGGSREVESSVEMMNA DGLPIGKRQKVDDPQLSSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019128 [exp]	0	1
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	3.2	0.8087
					Lus10043057 [exp]	4.7	0.8207
AT1G50910			unknown protein		Lus10011153 [exp]	5.9	0.7979
AT1G50910			unknown protein		Lus10043058 [exp]	9.0	0.8061
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	11.0	0.7647
AT4G38280			unknown protein		Lus10022622 [exp]	15.5	0.7274
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	17.0	0.7711
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	18.0	0.6714
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	18.2	0.7980
AT3G01800			Ribosome recycling factor (.1)		Lus10032060 [exp]	19.5	0.7491

Compare expression of checked genes

Lus10019128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.