Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31360 108 / 1e-26 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT1G60930 106 / 1e-25 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G10930 103 / 8e-25 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT5G27680 103 / 1e-24 RECQSIM RECQ helicase SIM (.1) AT4G35740 102 / 2e-24 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT3G05740 101 / 4e-24 RECQI1 RECQ helicase l1 (.1) AT1G27880 83 / 9e-18 DEAD/DEAH box RNA helicase family protein (.1) AT2G33730 56 / 1e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G16630 52 / 2e-07 DEA(D/H)-box RNA helicase family protein (.1) AT5G26742 52 / 3e-07 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034434 [exp] 303 / 1e-96 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10036983 [exp] 123 / 2e-31 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1) Lus10015467 [exp] 115 / 1e-28 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10004503 [exp] 109 / 9e-27 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10026219 [exp] 100 / 2e-23 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10033289 [exp] 99 / 3e-23 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10042451 [exp] 99 / 4e-23 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10034749 [exp] 92 / 1e-20 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 89 / 9e-20 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161200 [exp] 245 / 5e-75 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 115 / 1e-28 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G107400 [exp] 108 / 2e-26 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G104300 [exp] 107 / 4e-26 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G026400 [exp] 103 / 9e-25 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.005G019800 [exp] 102 / 2e-24 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.010G056500 [exp] 89 / 1e-19 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.006G024100 [exp] 54 / 5e-08 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G000100 [exp] 54 / 5e-08 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.012G045800 [exp] 54 / 7e-08 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10019129 pacid=23141838 polypeptide=Lus10019129 locus=Lus10019129.g ID=Lus10019129.BGIv1.0 annot-version=v1.0 ATGGCCACAGGCAGTGGAAAGTCCTTGTGTTATCAGCTTCCGCCTTTGCTGGTTAATAAGACTGCGGTTGTTGTGAGCCCTCTTATATCTCTAATGCAAG ATCAGGTGATGAGCTTGAAACATCAGGGTATTAGTGCTGAGTCCCTTGGAAGTGCTCAGACTGATCAGTCCGTGGATATGGGTGGATTTCGTTTGTTGTT CATGACTCCTGAAAAGGCCTGCGTCCTTTCCCACGGCTTCTGGTCGAAGTTATTAGAAGCTGGAATTCGTCTCCTTGCTGTCGATGAAGCACATTGCATA TCAGAGTGGGGGCATGACCAGGTATTCAAGGCATTTGAAGAGGCAGGGATCAAGTCTGGAATGTATCATGGCCAAATGAGCAACAGAGCTAAGCAAGAGT CCCACAGATCCTTTATCAGAGATGAGATACAGGTAATGGTTGCTACGATTGCTTTTGGGATGGGTACTGACAAGCCAAACGTGAGGCAAGTGATTCACTA TGGGTGTCCAAAAAGCCTTGAGTCCTATTACCAGGAAAGTGGACTCTGTGGTCGAGATGGTATAGCCTCTGTCTGTTGGCTTTACTATAGCAGAAGCGAC TTTGGGAAAGCTGAGTTTTACTGTGGAGAAGCTAAAACAGAGAATCAAAGGAGGGCTATTATGGAATCATTGATGGCTGCTCAGAGATGTTTCTCAATTA CTGCTTGCAGAAGACAGTATTTGCTTGATCACTTCGGAGAAGCTTCTCCAACTGCCAATTGTGGTTCGGCCTCCCCTGAGAAGTACTCTTATCAGATTTT CAGTTTGATGGGGAAGTATGAAAACTAG
AA sequence Show only first row Show all	>Lus10019129 pacid=23141838 polypeptide=Lus10019129 locus=Lus10019129.g ID=Lus10019129.BGIv1.0 annot-version=v1.0 MATGSGKSLCYQLPPLLVNKTAVVVSPLISLMQDQVMSLKHQGISAESLGSAQTDQSVDMGGFRLLFMTPEKACVLSHGFWSKLLEAGIRLLAVDEAHCI SEWGHDQVFKAFEEAGIKSGMYHGQMSNRAKQESHRSFIRDEIQVMVATIAFGMGTDKPNVRQVIHYGCPKSLESYYQESGLCGRDGIASVCWLYYSRSD FGKAEFYCGEAKTENQRRAIMESLMAAQRCFSITACRRQYLLDHFGEASPTANCGSASPEKYSYQIFSLMGKYEN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	0	1
AT1G48360			zinc ion binding;nucleic acid ...		Lus10041269 [exp]	1.7	0.7946
AT4G04180			P-loop containing nucleoside t...		Lus10040913 [exp]	7.9	0.7551
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003386 [exp]	14.8	0.6817
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	15.3	0.7721
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	18.7	0.7506
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	20.5	0.7692
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	25.8	0.7639
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020139 [exp]	29.3	0.7078
AT2G47210	MYB		myb-like transcription factor ...		Lus10021650 [exp]	30.7	0.7190
AT1G42440			unknown protein		Lus10013232 [exp]	33.5	0.7656

Compare expression of checked genes

Lus10019129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.