Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10360 270 / 7e-91 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G19645 206 / 1e-65 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT1G31300 199 / 5e-63 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034433 [exp] 466 / 3e-168 AT4G10360 321 / 3e-111 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10018287 [exp] 196 / 9e-62 AT1G31300 375 / 5e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10038335 [exp] 196 / 1e-61 AT1G31300 375 / 3e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036199 [exp] 192 / 2e-60 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10040622 [exp] 167 / 4e-50 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G133500 [exp] 281 / 2e-95 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.005G206000 [exp] 199 / 4e-63 AT1G31300 348 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.002G056600 [exp] 196 / 5e-62 AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.015G113200 [exp] 192 / 3e-60 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.012G118100 [exp] 185 / 2e-57 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10019130 pacid=23141775 polypeptide=Lus10019130 locus=Lus10019130.g ID=Lus10019130.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAGTTGGGTTGCTATTCATCCCCATTGTTGAAAATGCCACTACCCATCTGCTGGCTTCTGCATTTGTGGGTATCCTTATGTGCAGAGCTG TTTACGAATTCACAGGTTATGTTAGTCTTTTGTTGTTCAAAGGCTACTACAACAAACTCACTGCCAAACAAAAAATGGAATGGAACAATAGGGGATTCTC GACATTCCATGCCATCTTTGCAGCATTGCTATCTGTCTACCTCGTGTTGTTTTCAGATCTTTTTAAGGAAGATGATCAAGACGTAATGATGATTGACAAG TACTCCGTTCTATCCAACTCTGTGTTAGGGGTCTCCGTTGGCTATTTTCTGGCAGACCTTGCAATGATCGTTTGGTATTATCCAGTTCTGGGAGGGGTGG AGTATCTGTTGCATCATGGATTGTCACTCTTCGCATTACTTCTCGCCGTCCTCAGTGGCAATGCTCAGATTTATATACTCTTGGTTCTTTTCACTGAGTG CACAACTCCCTTTGTAAATTTAAGATGGTACTTGGATGTTGCTGGTCAGAAAACCTCGAAATTGTACATCTACAATGGGGTCATGCTATTCTTAGGGTGG TTGGTCGCAAGGATTCTTCTGTTCGTCTACTTCTTTCTACACATGTACAACCATTTCGATCAGGTCAGAACAATGTTTCCGCTAGGGTTCTATACAGTGG TCACGGTACCTCCGACGATGTCGATGATGAATGTGGTATGGTTTTGGAAGATTGCAAAGGGCATGCTCAAAACTGTCTCCAGGGCAAGAAAGGGTCACGA TCGTATTCAGTGA
AA sequence Show only first row Show all	>Lus10019130 pacid=23141775 polypeptide=Lus10019130 locus=Lus10019130.g ID=Lus10019130.BGIv1.0 annot-version=v1.0 MEEEVGLLFIPIVENATTHLLASAFVGILMCRAVYEFTGYVSLLLFKGYYNKLTAKQKMEWNNRGFSTFHAIFAALLSVYLVLFSDLFKEDDQDVMMIDK YSVLSNSVLGVSVGYFLADLAMIVWYYPVLGGVEYLLHHGLSLFALLLAVLSGNAQIYILLVLFTECTTPFVNLRWYLDVAGQKTSKLYIYNGVMLFLGW LVARILLFVYFFLHMYNHFDQVRTMFPLGFYTVVTVPPTMSMMNVVWFWKIAKGMLKTVSRARKGHDRIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10019130 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	3.3	0.8299
AT2G28605			Photosystem II reaction center...		Lus10029532 [exp]	9.8	0.8146
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	19.2	0.7751
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	24.4	0.7614
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	29.3	0.7324
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	38.7	0.7497
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	40.8	0.7619
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	43.4	0.7410
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	52.0	0.7424
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	69.8	0.7200

Compare expression of checked genes

Lus10019130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.