Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 952 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 946 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 872 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 498 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) AT1G55610 280 / 2e-79 BRL1 BRI1 like (.1.2) AT3G24790 248 / 3e-74 Protein kinase superfamily protein (.1) AT1G76370 247 / 1e-73 Protein kinase superfamily protein (.1) AT1G61860 243 / 3e-72 Protein kinase superfamily protein (.1) AT1G07870 244 / 4e-72 Protein kinase superfamily protein (.1.2) AT1G67720 256 / 5e-72 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034432 [exp] 1760 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 1019 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 1008 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 955 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 873 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 716 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 709 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 677 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035104 [exp] 491 / 2e-164 AT2G01820 452 / 2e-149 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103000 [exp] 1028 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G134900 [exp] 1009 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 1004 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 1000 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 715 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 707 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 498 / 6e-162 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 493 / 5e-160 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 488 / 4e-158 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 474 / 5e-153 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019131 pacid=23141755 polypeptide=Lus10019131 locus=Lus10019131.g ID=Lus10019131.BGIv1.0 annot-version=v1.0 ATGATCACGAGTCTCGTTTCCGCTCTTTGCTTCTTGTTATTGTTTCCTTCCTTTGCCGTCTCTCAGAGCTCTGACGCCGCCGTCATGCTCAAACTCAAGG ACAGTCTCGGGGATCCGGCCAGCCTCGGTTGGTCTGCTTCTAACCCCTGTGAATGGGACGGAGTGACCTGCAATGCCAATAAGGCGGTGACACGTATCAA AATCAGCGGTAAAGGTGTGAAGGGATCTCTCCCACCGGAGCTCTCCGATTTGGCTTCCTTGTCGATTTTGGAGATGGACGATAACTTCTTGACCGGTGCG CTTCCTAACTTATCCGGTTCGAGCTCGATTACTTACATCAATGTAATGAACAATAGTTTCAATTCCATCCCGTCGGGTTTCTTCTCCGGTCTGACCGGTC TGACCGGCGTCTTCCTCGACCAAAACCCGTTCCAGCCGTGGACGATCCCCGACGACGTCAAGAGCTTGACCTCGCTGAAGACTTTCTCGGCCACTAACGC TACAATTACGGGATCGATACCTGATTTCCTCTTCAGCGGAGACTCCATGACTGCTCTCAACAGTTTGCATTTGGCTGTCAATCGGTTGCAAGGACAGCTC CCAGCGACTTCTTCAGGATCGTTCCTCCAATCTCTGGTGCTCAACGGTCAACTCGGAGAGTCCAAGCTCAACGGTAGTATCACAGTGCTGCAGAATATGA CGTCCTTGACCGAAGTCTCGTTGCAAATGAACAGTTTCACAGGTCCGATTCCTGACTTTTCCAAATCTCCGTTGCAGACTCTGAACTTGAGAGATAATCA GATGACCGGTATCGTTCCTGCTTCTTTGTCCAAGATTTCCACGCTGCAGAACTTGGTTCTCACTAACAATTTCCTCCAAGGACCGACTCCGAAATTTGAT AGCTCGGTTGTTCTGGATATGAGAGCCGGTTCGAATCGTTTCTGCTTGGATGATCCTAGTGCTGACTGTGATACTCGGGTTAACAACTTGTTGGCCGCCG TTGAAGCGATGGGATACCCTGCTGTTTTGGCTGATAGTTGGAAAGGAAACGATCCTTGCATGAACTGGAAGGGAATTCAATGTACTGGGAAAGATATTAT ACTCGTCAATTTCAAAAGCATGGGGCTTACAGGTTCGATTTCGCCTAGTTTCTCATTGATCACTTCGTTGCAGAAGTTGTTACTGTCGAACAATGATCTC ACCGGCACCATACCAGACGAGCTTGCAAAGCTGCCTAATCTGAAAGTGTTGGATGTATCACATAACAATATTCATGGGAAGGTTCCTAGCTTCAATGGTG TTAGCGTGGTAACTGATGGAAATCCTGATATTGGTAAGGAAATTAGTTCACCTCCTGGTAGTCAAACTCCTGGTTCTGATGGGAAGAATGGCAAGAGTAG TGGGAAGATTGTGGGAGCTGTGATTGGAGTGGTTGCTTGTTTGGTTGTGGTTGTAGGCGCTGTTGGTTTCTACCTCTATTGCAGGAAAAGGAAAAGATAC ACTAAAGTGCAGAGTCCCAACACGGTGGTTATCCATCCTAATCATTCAGGAAACCAGGATGCTATCAAGATTACTGTTGCACCTACCTTTAACAGTGTTA ATGGTGGTTCTGCTGATAATAACAATATCCATGTCGTTGAAGCGGGTAGTATGGTGATCACCATTCAGGTTTTGCAAGAAGTGACTGATAACTTCAGTCA GGACAACATACTCGGGAGAGGTGGGTTTGGCACTGTTTACAAAGGCGAACTACCGGATGGGACGAAAATCGCAGTGAAGAGGATGGAGCCTTCTGCAATG AGGGAAAGTGGACTGACGGAGTTCACTTCCGAGATTGCGGTGCTTACGAAAGTCAGGCATCGACATCTGGTGTCGCTTCTCGGGTATTGCTTGGACGGGA ATGAGAAGATTCTTGTCTATGAGTACATGCCTCAGGGAACTCTTAGTAGGTTTCTGTTCAACTGGAAGAGTGAAGGCTTGCAGCCGTTGGAGTGGAAAAC AAGACTGACGATTGCGTTGGATGTTGCCAGAGCTGTTGAGTATCTTCATGGTCTTGCCCACCGGAGCTTCATCCATAGGGATCTCAAGCCTTCCAATATT CTTCTTGGTGATGACTTGCGCGCTAAAGTCGCGGACTTTGGGCTGGTTCGTCTTGCCCCCGAGGGACAGAACTCCATTTCAACAAGGCTTGCTGGGACTT TTGGATATATGGCTCCAGAATATGCTGTGACTGGACGAGTAACGATCAAGGTGGACGTGTACAGCTTCGGGGTGATACTAATGGAATTAATCTCCGGAAG GAGAGCCCTCGATGAAAGAGCTCCAGCGGACAAACTACACCTGGTACCTTGGTTCCGCAGAATGCACATCGACAAGACCAGATTCAAGGAAGCCATCGAC CCATGGATGGAAGTAAACAATGAGGAAACGCTTGAGAGCATTACCACGGTTGCTGACCTGGCCGGTCACTGCACTGCAAGGGAACCGTACCAGAGACCCG ACATGAGCCACGTAGTCAACACTCTGTCGTCACTCGCCGAGCTGTGGAAGCCAGATCATCGTTCCGGACAAGATTCCGACGAGGAGTTTGAATCCATCGA TCTTCAGATGACGTTGCCTCAGGCGCTGAGGAGGTGGCAGGAAATTGAAGGCGTCGACACCGGCGTGTTCATTTCAGGCGTTGATGATGTTGATGCTGAT GCCACTACGCAGAATAGCGTTCATACTCGGCCGTCTGGGTTCGCCGGAACTTTCACGTCGACTGATGCTCGGTAG
AA sequence Show only first row Show all	>Lus10019131 pacid=23141755 polypeptide=Lus10019131 locus=Lus10019131.g ID=Lus10019131.BGIv1.0 annot-version=v1.0 MITSLVSALCFLLLFPSFAVSQSSDAAVMLKLKDSLGDPASLGWSASNPCEWDGVTCNANKAVTRIKISGKGVKGSLPPELSDLASLSILEMDDNFLTGA LPNLSGSSSITYINVMNNSFNSIPSGFFSGLTGLTGVFLDQNPFQPWTIPDDVKSLTSLKTFSATNATITGSIPDFLFSGDSMTALNSLHLAVNRLQGQL PATSSGSFLQSLVLNGQLGESKLNGSITVLQNMTSLTEVSLQMNSFTGPIPDFSKSPLQTLNLRDNQMTGIVPASLSKISTLQNLVLTNNFLQGPTPKFD SSVVLDMRAGSNRFCLDDPSADCDTRVNNLLAAVEAMGYPAVLADSWKGNDPCMNWKGIQCTGKDIILVNFKSMGLTGSISPSFSLITSLQKLLLSNNDL TGTIPDELAKLPNLKVLDVSHNNIHGKVPSFNGVSVVTDGNPDIGKEISSPPGSQTPGSDGKNGKSSGKIVGAVIGVVACLVVVVGAVGFYLYCRKRKRY TKVQSPNTVVIHPNHSGNQDAIKITVAPTFNSVNGGSADNNNIHVVEAGSMVITIQVLQEVTDNFSQDNILGRGGFGTVYKGELPDGTKIAVKRMEPSAM RESGLTEFTSEIAVLTKVRHRHLVSLLGYCLDGNEKILVYEYMPQGTLSRFLFNWKSEGLQPLEWKTRLTIALDVARAVEYLHGLAHRSFIHRDLKPSNI LLGDDLRAKVADFGLVRLAPEGQNSISTRLAGTFGYMAPEYAVTGRVTIKVDVYSFGVILMELISGRRALDERAPADKLHLVPWFRRMHIDKTRFKEAID PWMEVNNEETLESITTVADLAGHCTAREPYQRPDMSHVVNTLSSLAELWKPDHRSGQDSDEEFESIDLQMTLPQALRRWQEIEGVDTGVFISGVDDVDAD ATTQNSVHTRPSGFAGTFTSTDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	1.7	0.8475
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	3.6	0.7694
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	4.0	0.8376
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	4.0	0.8269
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	5.9	0.8065
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	8.7	0.8102
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007965 [exp]	11.1	0.8344
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	11.8	0.7776
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	12.0	0.8049
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	12.4	0.7149

Compare expression of checked genes

Lus10019131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.