Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25240 254 / 6e-83 ENTH/VHS/GAT family protein (.1) AT1G68110 241 / 9e-78 ENTH/ANTH/VHS superfamily protein (.1) AT1G14686 184 / 4e-56 ENTH/ANTH/VHS superfamily protein (.1) AT2G01920 160 / 2e-47 ENTH/VHS/GAT family protein (.1) AT2G25430 82 / 3e-17 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 79 / 4e-16 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G01600 77 / 1e-15 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 74 / 1e-14 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 73 / 3e-14 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 73 / 4e-14 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034431 [exp] 493 / 5e-176 AT1G68110 309 / 2e-102 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 85 / 5e-18 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10012686 [exp] 81 / 1e-16 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 80 / 2e-16 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 79 / 4e-16 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 79 / 5e-16 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 79 / 5e-16 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10021796 [exp] 78 / 8e-16 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 77 / 2e-15 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140100 [exp] 318 / 1e-107 AT1G25240 410 / 1e-142 ENTH/VHS/GAT family protein (.1) Potri.002G224500 [exp] 95 / 1e-21 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 94 / 3e-21 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 77 / 2e-15 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 76 / 5e-15 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.008G132100 [exp] 74 / 1e-14 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G026900 [exp] 74 / 1e-14 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.010G110000 [exp] 74 / 1e-14 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 74 / 2e-14 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G066900 [exp] 73 / 4e-14 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10019132 pacid=23141815 polypeptide=Lus10019132 locus=Lus10019132.g ID=Lus10019132.BGIv1.0 annot-version=v1.0 ATGAAGCTGTGGAAGAGAGCAGCGGGGGCTCTCAAGGACCACAACAGCATCCTCCTCGCGACAATCCTCACGCCGCGCACCTCTTCCCGCAACAGCACCC TCGAGGCGGCGATCATCAAGGCCACCAGCCACGACGGGGCCAAGATCGACTACAGGAGCGCCCAGCAGGTTTTGGAGTGGATCCGCAGGTCCCCCGTCAG CCTGAAGCCGTTGGTTTGGGGGCTCTGCCTTAGGATGGAGCGGACCCATAGCTGGGTGGTGGCGATCAAGGGCTTGATGTTGATGCACGGGATCTTGTGC TGCAAGACGCCGTTGGTTTTGAAGATCGGACGACTGCCGTTTGATCTCTCGGAATTCAGCGACGGGCATTCTAGCGGTAGCAAAATGTGGGGGTTCAATG CTTTTGTTCGTTCGTACTATACTTTCTTGGATCAGCGAACCGCCCTCTTGTACCCCAGCGCAAACAAAAAGTGCAAGAACAAGACAGCGCCTGCATCAAC TCAAGATCACGAAAACAACGATGATGCCGACGACGTCATAAAAAGGGCGAAACTATCAGAAGAGTTAGCAAAGCTACAGAAATGGCAGGAACTTCTAGAC CTACTCCTCGAAATCAAGCCGTTGGCCGACAACATGAGGCGGAGCCCTCTGATCCTCGAAGCCATGGACTGCGTCACCGTCGAGATCTTCGACCTCTACA GCAACATCTGCCGCGGCGTGACGCGCGTCCTTATGGAGGCCGGGAAGGCCGAATCCGATTCAGCCTTCCGCGTCCTCCGAAAGGCGAGGACCAAGGGCAA GAGCTTGGGGAGCTATTTTGAGTTGTGTCGAGCATTCGACGTTTTCAACGCCATGGGGTTCCCGAAAGACACGCATCGTTCCCGATGA
AA sequence Show only first row Show all	>Lus10019132 pacid=23141815 polypeptide=Lus10019132 locus=Lus10019132.g ID=Lus10019132.BGIv1.0 annot-version=v1.0 MKLWKRAAGALKDHNSILLATILTPRTSSRNSTLEAAIIKATSHDGAKIDYRSAQQVLEWIRRSPVSLKPLVWGLCLRMERTHSWVVAIKGLMLMHGILC CKTPLVLKIGRLPFDLSEFSDGHSSGSKMWGFNAFVRSYYTFLDQRTALLYPSANKKCKNKTAPASTQDHENNDDADDVIKRAKLSEELAKLQKWQELLD LLLEIKPLADNMRRSPLILEAMDCVTVEIFDLYSNICRGVTRVLMEAGKAESDSAFRVLRKARTKGKSLGSYFELCRAFDVFNAMGFPKDTHRSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	0	1
AT1G15170			MATE efflux family protein (.1...		Lus10042732 [exp]	1.0	0.8060
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	3.2	0.7661
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	6.7	0.7612
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	12.4	0.7085
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	13.4	0.6833
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	18.7	0.7506
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	24.1	0.7287
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	25.8	0.7390
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	31.7	0.7492
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	33.8	0.6906

Compare expression of checked genes

Lus10019132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.