Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01890 384 / 6e-134 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2) AT1G14700 366 / 9e-127 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2) AT1G25230 363 / 1e-125 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G01880 356 / 2e-123 PAP7, ATPAP7 purple acid phosphatase 7 (.1) AT3G17790 328 / 4e-112 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034429 [exp] 507 / 0 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2) Lus10031941 [exp] 357 / 9e-124 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2) Lus10035100 [exp] 357 / 1e-121 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139100 [exp] 399 / 1e-139 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2) Potri.015G031300 [exp] 370 / 7e-129 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2) Potri.015G031400 [exp] 353 / 8e-122 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1) Potri.012G042200 [exp] 351 / 4e-121 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1) Potri.010G101900 [exp] 348 / 6e-120 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10019133 pacid=23141817 polypeptide=Lus10019133 locus=Lus10019133.g ID=Lus10019133.BGIv1.0 annot-version=v1.0 ATGGCGACGGCAGACCTGCCGCGGGTGGAGCACAAGTACTCGATGAAGGAGAAGGCGGGCGGCGGATCGACGGCGGTGATGGTGGTCGGAGATTGGGGTC GTAAAGGACACTACAACCAAAGCCGAGTTGCCTATCAGATGGGGAAGATTGCTGAGGAAATGAACGTGGATTTCGTGATATCCACCGGCGATAACTTCTA CGACGACGGATTGAAAGGAGTGGATGACCCTGCGTTCTATCACTCTTTCTCCCACATCTATACCGCAACTAGCTTGCAGAAGCCCTGGTACAGCATTCTG GGGAACCATGACTACAGAGGCAACGTCGAAGCACAACTGAGCACATCCCTACAAGACAAGGATTCCAGATGGGTTTGCCACAGATCCTTCATCCTCAACA CCAATGCAGCCCAGTTTTTCTTCGTCGACACCACTCCCTTCTCCGACAAATACTTCGACGTACCAGAAGACCATACCTACGACTGGAGCGGCCTTCTCCC CGACCGTGCCACCTATCTCTCCAACCTCCTCCGCGACCTGGACTCGTCTCTCAGAGCGTCCAACGCTAGGTGGAAGATCGTCGTGGGACACCACACCATC ATGAGCGCGGGCCACCATGGCAACACCGTGGAGCTGGAAGCGCAGCTGCTTCCTGTTTTGGAGGCCAACAATGTTGACCTCTACGTCAACGGCCATGACC ATTGCTTGGAGCATATTGGAAGTAGTCGCACCCGGCTCCAGTTCCTCACCAGTGGCGGTGGGTCCAAGGCGTGGAAAGGTGATATCAGCAAGTGGAATGC TGACGAGATGAAGTTGTATTACGATGGTCAGGGCTTCATGACGCTTCAGATTTCTCAGGATGATGTGGATGTGGTGTTCTATGATGTCGACGGGAATGTC CTGCATCGATGGAGCACATCTGAACTGTCTCTCTCTCAAATGTAG
AA sequence Show only first row Show all	>Lus10019133 pacid=23141817 polypeptide=Lus10019133 locus=Lus10019133.g ID=Lus10019133.BGIv1.0 annot-version=v1.0 MATADLPRVEHKYSMKEKAGGGSTAVMVVGDWGRKGHYNQSRVAYQMGKIAEEMNVDFVISTGDNFYDDGLKGVDDPAFYHSFSHIYTATSLQKPWYSIL GNHDYRGNVEAQLSTSLQDKDSRWVCHRSFILNTNAAQFFFVDTTPFSDKYFDVPEDHTYDWSGLLPDRATYLSNLLRDLDSSLRASNARWKIVVGHHTI MSAGHHGNTVELEAQLLPVLEANNVDLYVNGHDHCLEHIGSSRTRLQFLTSGGGSKAWKGDISKWNADEMKLYYDGQGFMTLQISQDDVDVVFYDVDGNV LHRWSTSELSLSQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01890		PAP8, ATPAP8	purple acid phosphatase 8 (.1....		Lus10019133 [exp]	0	1
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	1.0	0.8407
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	3.5	0.7578
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031922 [exp]	7.7	0.7296
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	17.9	0.7354
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	19.4	0.7413
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	21.7	0.7285
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10009819 [exp]	21.9	0.7593
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	23.5	0.6725
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	25.1	0.7071
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	25.6	0.7233

Compare expression of checked genes

Lus10019133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.