Plant FIBer expression Database

Lus10019134 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68080 129 / 6e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034428
[exp]
186 / 5e-57 AT1G68080 380 / 5e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G139000
[exp]
129 / 1e-35 AT1G68080 450 / 5e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
PFAM info
Representative CDS sequence
>Lus10019134 pacid=23141759 polypeptide=Lus10019134 locus=Lus10019134.g ID=Lus10019134.BGIv1.0 annot-version=v1.0
ATGGGAGACGACAATGGCAGCAGCAGCAGCAAAATTCAAAATGAGGCGCGTCTAATCATCCCCGATTTCCTCTCCCTTCAAGAGTGCCAGGAATTGGAGT
TCATTCACCGGAGCTGCTCCACCGTCGGATATCGTCCCGACGTCTTCTCAACCACTCTATCACATCTCATCGCCACCAATTCTTCACACCTCATCGTCCC
TTTCCTCTCCATCCGTGACCGCCTGAAAGACAAGGTTGAGGAGTTTTTCCACTGTGAGTACGAGCTCTGCGTTGAGTTCACTGGTTTGATTAGGCTGTTT
CCATCTATACAGCTGATGATCGTAATGTTCATTCGGTTGATGAGGTATTTCTTTCTGTATTGTTTGTGTTGTTTCAGTTATATTCTTGCTGCTGGTTTGT
ATGTATCTTCCAGAGCTGCAACTGCTCTGTATCCTCAAAATGATTTCTCTTGCTTTGAACGTGTGTCCATGCCATGGAGGTCAGAAAACGTGATCCCAGC
TTTGACGTCTTTGAACAGACGGTACAATTTTACTGTTGGAAGGCCCCAAAACTACTGGAGTCTCAACAAGTCGGAAGGAGCAAGGTGGGATTTCTGTCTG
AGGTACAGCAGGGGGAGATTGCTTATCTGA
AA sequence
>Lus10019134 pacid=23141759 polypeptide=Lus10019134 locus=Lus10019134.g ID=Lus10019134.BGIv1.0 annot-version=v1.0
MGDDNGSSSSKIQNEARLIIPDFLSLQECQELEFIHRSCSTVGYRPDVFSTTLSHLIATNSSHLIVPFLSIRDRLKDKVEEFFHCEYELCVEFTGLIRLF
PSIQLMIVMFIRLMRYFFLYCLCCFSYILAAGLYVSSRAATALYPQNDFSCFERVSMPWRSENVIPALTSLNRRYNFTVGRPQNYWSLNKSEGARWDFCL
RYSRGRLLI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G68080 2-oxoglutarate (2OG) and Fe(II... Lus10019134
[exp]
0 1
AT5G09250 KIWI ssDNA-binding transcriptional ... Lus10013733
[exp]
9.4 0.7901
AT3G07750 3'-5'-exoribonuclease family p... Lus10006382
[exp]
15.5 0.7696
AT2G20410 RNA-binding ASCH domain protei... Lus10014656
[exp]
17.7 0.7860
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Lus10019399
[exp]
17.9 0.7771
AT3G01410 Polynucleotidyl transferase, r... Lus10014521
[exp]
22.6 0.7565
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Lus10034358
[exp]
22.6 0.7585
AT2G06025 Acyl-CoA N-acyltransferases (N... Lus10021559
[exp]
23.9 0.7714
AT2G43940 ATHOL3, HOL3 HARMLESS TO OZONE LAYER 3, S-a... Lus10027086
[exp]
26.8 0.7806
AT5G51140 Pseudouridine synthase family ... Lus10016743
[exp]
32.0 0.7409
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Lus10019468
[exp]
34.2 0.7434

Lus10019134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.