Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02010 873 / 0 GAD4 glutamate decarboxylase 4 (.1) AT5G17330 857 / 0 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT2G02000 849 / 0 GAD3 glutamate decarboxylase 3 (.1) AT1G65960 815 / 0 GAD2 glutamate decarboxylase 2 (.1.2) AT3G17760 786 / 0 GAD5 glutamate decarboxylase 5 (.1.2) AT3G17720 253 / 4e-82 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G27980 87 / 4e-18 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035096 [exp] 870 / 0 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10028530 [exp] 846 / 0 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10034425 [exp] 654 / 0 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10034426 [exp] 291 / 2e-97 AT2G02010 227 / 4e-73 glutamate decarboxylase 4 (.1) Lus10031934 [exp] 243 / 5e-79 AT2G02010 229 / 2e-74 glutamate decarboxylase 4 (.1) Lus10009116 [exp] 242 / 8e-73 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10003129 [exp] 78 / 5e-15 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10011345 [exp] 72 / 5e-13 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G141100 [exp] 914 / 0 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.010G100500 [exp] 904 / 0 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.017G144421 [exp] 869 / 0 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075200 [exp] 869 / 0 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 868 / 0 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.012G039000 [exp] 810 / 0 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.003G168800 [exp] 96 / 1e-20 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10019136 pacid=23141758 polypeptide=Lus10019136 locus=Lus10019136.g ID=Lus10019136.BGIv1.0 annot-version=v1.0 ATGGTTCTCTCAAAGATGGCTTCCGAATCGGACATTTCAGTCCACTCCACCTTCGCTTCCCGCTACGTCCGGGAGTCACTCCCCAGGTACAAGATGCCCG AAAACTCCATCCCGAAAGAAGCAGCTTTCCAGATCATCAACGACGAGCTCATGCTCGATGGGAAGCCGAGGTTGAACCTCGCTTCCTTCGTCACCACCTG GATGGAGCCTGAGTGCGACAAGCTCATCATGGACGCTCTGAACAAGAACTACGTCGACATGGATGAGTACCCTGTCACTACCGAGCTCCAGAACCGTTGC GTCAACATGATCGCCCACTTATTCAACGCTCCCCTCGGTGACTCCGATGCGGCTGTCGGTGTAGGCACCGTTGGCTCCTCCGAGGCCATCATGCTCGCTG GCCTCGCCTTCAAACGGCAATGGCAGAACAAACGCAGAGCCCTTGGATTGCCCGTTGACAAGCCTAACATCGTCACCGGCGCTAATGTTCAGGTGTGCTG GGAGAAATTCGCGAGGTACTTCGAGGTGGAGCTGAAGGAAGTGAAGCTAACGGAAGGATACTACGTGATGGACCCGGAAAAGGCAGTGGAAATGGTGGAC GAAAACACAATCTGCGTGGCTGCAATTCTAGGGTCCACACTCAACGGCGAGTTCGAAGACGTCAAGCGCCTGAACGACTTGTTGGTCGAGAAGAACAAAC TCACCGGATGGGACACCCCAATCCACGTCGACGCTGCCAGCGGCGGCTTCATCGCCCCTTTCCTATGGCCGGAGCTGGAGTGGGACTTCCGTCTCCCGCT AGTCAAGAGCATCAACGTCAGCGGCCACAAGTACGGCCTCGTCTACGCCGGCGTCGGCTGGGTTATCTGGAGGAGCAAGGAGGATCTCCCGGAGGAATTG ATCTTCCACATCAACTACCTCGGCGCCGATCAGCCGACATTCACCCTCAATTTCTCGAAAGGCTCGAGCCAGATCATCGCGCAGTACTACCAATTGATCC GATTAGGTTACGAAGGGTACCGTAACGTGATGGAGAATTGCCACGGGAACGCCATGGTCCTGAAGCAAGGGCTGGAGAATACGGGACGATTCGACATCGT CTCTAAAGACATCGGCGTACCCTTGGTGGCGTTCTCCCTGAAGGACAGTAGCCGGCACGACGAGTTCGAGATCGCGGAGATGCTGAGGAGGTACGGGTGG ATTGTGCCGGCGTATACGATGCCGGCGGACGCGCAGCATATTACGGTGCTAAGGGTTGTGATTCGGGAGGACTTCTCGCGGACGCTGGCGGAGAGATTGG TGTTGGATATTGTTAAGGTGCTGCACGATCTGGATGCTATGCCGGCGAAGATAAGCGCCAAGGTGGCGGTGGTGGAAGAGGTGGTCGTCGGTGGTGGTGG GAACGGGAGGGTGAACGGGACATTCTTGAAGAAGACGGAGATGGAGACCCAGAGGGAGATCACTACCTACTGGAAGAACTTCGTGGCATCGAAGAAGAAG AACAACAAGAACACCATTTGTTAA
AA sequence Show only first row Show all	>Lus10019136 pacid=23141758 polypeptide=Lus10019136 locus=Lus10019136.g ID=Lus10019136.BGIv1.0 annot-version=v1.0 MVLSKMASESDISVHSTFASRYVRESLPRYKMPENSIPKEAAFQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDALNKNYVDMDEYPVTTELQNRC VNMIAHLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRQWQNKRRALGLPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPEKAVEMVD ENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKLTGWDTPIHVDAASGGFIAPFLWPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPEEL IFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYRNVMENCHGNAMVLKQGLENTGRFDIVSKDIGVPLVAFSLKDSSRHDEFEIAEMLRRYGW IVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIVKVLHDLDAMPAKISAKVAVVEEVVVGGGGNGRVNGTFLKKTEMETQREITTYWKNFVASKKK NNKNTIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	0	1
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	1.0	0.9617
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	2.4	0.9549
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10002945 [exp]	3.6	0.9135
AT5G49760			Leucine-rich repeat protein ki...		Lus10012159 [exp]	7.8	0.8912
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	9.9	0.9204
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	11.2	0.9113
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10018382 [exp]	13.1	0.8923
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	13.6	0.9534
					Lus10005655 [exp]	16.2	0.9054
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	18.7	0.9295

Compare expression of checked genes

Lus10019136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.