Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 395 / 3e-137 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 380 / 3e-131 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 352 / 1e-120 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 346 / 9e-114 unknown protein AT4G15970 312 / 3e-105 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 204 / 3e-63 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 198 / 6e-61 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 197 / 2e-60 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 181 / 2e-54 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G56550 51 / 4e-07 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034422 [exp] 556 / 0 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 464 / 3e-166 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 342 / 5e-116 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 336 / 9e-114 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 288 / 2e-95 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 287 / 1e-94 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 283 / 2e-93 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 278 / 2e-91 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032455 [exp] 198 / 1e-60 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099400 [exp] 428 / 4e-150 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 423 / 9e-149 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 367 / 7e-127 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 365 / 4e-126 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 224 / 6e-71 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 222 / 4e-70 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 218 / 9e-68 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 211 / 9e-66 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 57 / 6e-09 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 49 / 4e-06 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10019139 pacid=23141730 polypeptide=Lus10019139 locus=Lus10019139.g ID=Lus10019139.BGIv1.0 annot-version=v1.0 ATGTCCTCCCGCCGCGGTCTGTCCCCCCGCCGAGCTCTCTTCATCTTCACCTCCGCCTTCATCTCCTTCGCCCTCTTCTACAGCTTCGTCGCTTCCTTCT CCCTCCACCTCTTCTCCTTCCCCGCCGTCCCCGCCGTCCGCTTCCCCACCTATTTCTCCTCTTTCATCCAACCTAGCAATGAAGAGAAGCTCGACAAAGT ACTGAGAGGCGCGGCAATGAGAGATAACAAGACTGTAATTCTAACTACATTGAACGAAGCGTGGGCGACTCCAGGCTCAGTGTTCGATCTCTTCATTGGG AGCTTCCGTACAGGGATAAGGACTCGTAGGCTGTTGAGTCACTTGGTGATCATAACATTGGATGAAAAAGCATATCGGCGGTGTAAGGAATTGCATAGCC ATTGCTATGCTCTTGTGACTGAAGGAGTTGATTTCCGGCACGATGCGTATTTCATGACTCCGGCTTACTTGAAGATGATGTGGAGGAGGATCGACTTCTT ACGCTCTGTTCTTGAATTAGGCTATAATTTCGTCTTCACGGATGCAGATGTCATGTGGTTTAGAGACCCATTCCCGCGGTTTTATCCAGATGCAGACTTT CAGATTGCTTGTGATCTCTATTCAGGGAGTAGCGTCGACTTAAAGAACAGAGTCAATGGAGGGTTTACTTACGTGAAGGCGAACAATCGCTCAATTGCGT TTTACAAATTCTGGCACTCTTCACAGTACACTTACCCTGGCTATCATGATCAGGATGTTTTTAACTATATCAAGAAGAGTGATTATGTTAAGGGTCTTGG GTTGAAGATGAGGTTCTTGGACACTGCTTATTTTGGTGGACTTTGTGAACCCAGTAAAGACTTCAATGTCGTTTGCACCATGCATGCGAACTGCTGTTTG GGCTTGGATAGCAAGCTTATTGATCTGAAGCTGATGCTTGGTGACTGGAGAAACTTTCTGTCATTGTCGCTGAAGCTGAAAAGAGAATTACGCATCTCTT GGAGGGTGCCCCATAACTGCAGGTGA
AA sequence Show only first row Show all	>Lus10019139 pacid=23141730 polypeptide=Lus10019139 locus=Lus10019139.g ID=Lus10019139.BGIv1.0 annot-version=v1.0 MSSRRGLSPRRALFIFTSAFISFALFYSFVASFSLHLFSFPAVPAVRFPTYFSSFIQPSNEEKLDKVLRGAAMRDNKTVILTTLNEAWATPGSVFDLFIG SFRTGIRTRRLLSHLVIITLDEKAYRRCKELHSHCYALVTEGVDFRHDAYFMTPAYLKMMWRRIDFLRSVLELGYNFVFTDADVMWFRDPFPRFYPDADF QIACDLYSGSSVDLKNRVNGGFTYVKANNRSIAFYKFWHSSQYTYPGYHDQDVFNYIKKSDYVKGLGLKMRFLDTAYFGGLCEPSKDFNVVCTMHANCCL GLDSKLIDLKLMLGDWRNFLSLSLKLKRELRISWRVPHNCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	0	1
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	2.8	0.9183
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	3.0	0.9227
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	3.7	0.9252
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	3.7	0.9295
AT2G11890			adenylate cyclases (.1.2)		Lus10002992 [exp]	3.7	0.9032
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	4.1	0.8999
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	5.0	0.8948
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	5.0	0.9153
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10006685 [exp]	6.7	0.8802
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	6.7	0.9087

Compare expression of checked genes

Lus10019139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.