Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28760 211 / 1e-62 Uncharacterized conserved protein (DUF2215) (.1) AT3G49840 107 / 4e-25 Uncharacterized conserved protein (DUF2215) (.1) AT5G67610 104 / 5e-24 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034420 [exp] 382 / 2e-128 AT1G28760 413 / 8e-141 Uncharacterized conserved protein (DUF2215) (.1) Lus10011548 [exp] 102 / 1e-22 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10019263 [exp] 97 / 3e-21 AT5G67610 441 / 2e-151 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064800 [exp] 225 / 9e-68 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1) Potri.019G039300 [exp] 183 / 3e-53 AT1G28760 320 / 1e-106 Uncharacterized conserved protein (DUF2215) (.1) Potri.007G005500 [exp] 114 / 2e-27 AT5G67610 400 / 1e-135 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Potri.019G039401 [exp] 82 / 4e-19 AT1G28760 44 / 2e-06 Uncharacterized conserved protein (DUF2215) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10225 [flax] [poplar] NEMP NEMP family
Representative CDS sequence Show only first row Show all	>Lus10019140 pacid=23141706 polypeptide=Lus10019140 locus=Lus10019140.g ID=Lus10019140.BGIv1.0 annot-version=v1.0 ATGGTGTCCTCTTCGCTTCCTCTGCTTCTTCTCTTGTCTGTGACGCTTTCATCTTCCATCATTCCCCTCTCTCATGCATCCCCCGAAGCGACCATTCTGA AAGGTACGGTGGGTTTTGCTGTCTATTTCCTTCTAGGGTTTATCTTCGTTTCCTTCTGGGTTCTTCAGTGTTACAGATTTTCTACTTCTGGTGTGTTGCT TGCAGGTGTAGATCTGGGAAATCCTCTACTTGCTGTTAATTTAAAGCCTGGGTATGTACACTCATCTGACAGTGATTCCAAGGAAGCATTGTTCTGTGAT CGGGTCAAAGTTTCTGGTCTATCGAGATTGAAACTTGCTAGTTACTCTAACTCGCTCAGAGTTACACTGGTACCCTCGGCTGTAATCCCTGAAAGATTGC ATCGGAGAATTCAAGTTTGCTTCCACCGGAATGTTTCTACGGGATGGTGTGATTGTGGTAAGGATGAGTGGAAAACGTTTCAAAATGGTCAATGGAGTGC ACTCATGTCTCCTTATGGGGAGCGATATGTTGATGTGAAGGCCACTGGAGAAATTTCTGGGCATATTACTATCCACGTCGAAGAAGAATCACAACGTTGG CGCCTCTTGTGTCTGGCATTGGGACTCATCTTACTATTTCTTGCTCCAATAGTTAGTAGCTGGGTTCCTTTCTACTATAGCTCTTCCATGGCTATTGGTA TTATTCTTGTCATCGTCATTCTTCTATTTCAGATATACATATTTGTATCAGTTGGCATTGTACTTGCAGGAGCAGCATTAGGGTATTGGATGGTGAGGAA GTTTGTCGTCTCAAAAGATGGAAATGTGGACAGTGGTGTAGCACAATTTGTTAAATGGGCAATTCGTGCTGTCGCAACAACATTTATCTTCCAGAGCACA GCTGACTCGATGTATGCATTGGTCACAGTGGTTTTATCGTACGCTATATGCTTTTTAATCATGAAGTGGATGAGGCGGCCTAAGTACCAGTCAGGTAAGG TGTTAGGAAAGCAGAGTGCTGAATTCTACCGCAGAGCAGCAGCTGGCAAAATGAGCCCTGTTGGGAGAACCTCGAGTGCTTGGGTGAACTCCCCTGTGAA AGGATTGGTGACGTCTCCATCTGCTCCTGCTAGCCCTCTAGCGCAGCAAGATTACTACTCAACCTTCCATAAAACAGCGAAACGGAAGAAGTTTACAAAG GAAGAATGGGACGAGTTCACGAAGGAGTCGACGAAAGAAGCAATGAGAGAATGGGCGTCATCTCCGGAGGTGGCGAGCTGGCTGATCAACAACGCGGAAC GAATTCAACTAGTACCAAGTGATGGCAGTTCGGAGGAGATAACAGGAAGTGACTCAGACTCGGCCGGGGAAGATGAATCGAGCCACAAAGGCGGGCTTAG CTGCTTATTCAGCTGGTGA
AA sequence Show only first row Show all	>Lus10019140 pacid=23141706 polypeptide=Lus10019140 locus=Lus10019140.g ID=Lus10019140.BGIv1.0 annot-version=v1.0 MVSSSLPLLLLLSVTLSSSIIPLSHASPEATILKGTVGFAVYFLLGFIFVSFWVLQCYRFSTSGVLLAGVDLGNPLLAVNLKPGYVHSSDSDSKEALFCD RVKVSGLSRLKLASYSNSLRVTLVPSAVIPERLHRRIQVCFHRNVSTGWCDCGKDEWKTFQNGQWSALMSPYGERYVDVKATGEISGHITIHVEEESQRW RLLCLALGLILLFLAPIVSSWVPFYYSSSMAIGIILVIVILLFQIYIFVSVGIVLAGAALGYWMVRKFVVSKDGNVDSGVAQFVKWAIRAVATTFIFQST ADSMYALVTVVLSYAICFLIMKWMRRPKYQSGKVLGKQSAEFYRRAAAGKMSPVGRTSSAWVNSPVKGLVTSPSAPASPLAQQDYYSTFHKTAKRKKFTK EEWDEFTKESTKEAMREWASSPEVASWLINNAERIQLVPSDGSSEEITGSDSDSAGEDESSHKGGLSCLFSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67610			Uncharacterized conserved prot...		Lus10019140 [exp]	0	1
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	5.8	0.8803
AT2G16485			nucleic acid binding;zinc ion ...		Lus10018078 [exp]	7.5	0.8553
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	10.8	0.8469
AT4G16141	GATA		GATA type zinc finger transcri...		Lus10029863 [exp]	14.3	0.8683
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	15.1	0.8561
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	22.1	0.8668
AT3G53940			Mitochondrial substrate carrie...		Lus10024344 [exp]	27.9	0.8475
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	28.6	0.8342
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	30.2	0.8569
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10033402 [exp]	37.1	0.8014

Compare expression of checked genes

Lus10019140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.