Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73400 651 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 243 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 242 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 242 / 4e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 207 / 4e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 193 / 9e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 194 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 187 / 9e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 183 / 4e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 182 / 2e-49 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034419 [exp] 1075 / 0 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 254 / 2e-76 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 251 / 5e-75 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 207 / 6e-59 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 201 / 1e-57 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 199 / 6e-57 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 195 / 4e-55 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041193 [exp] 177 / 1e-48 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 176 / 1e-47 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098600 [exp] 744 / 0 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 247 / 2e-73 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 213 / 5e-62 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 207 / 2e-60 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 191 / 1e-53 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 191 / 7e-53 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 178 / 2e-49 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 172 / 1e-46 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 170 / 1e-45 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 171 / 2e-45 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019141 pacid=23141719 polypeptide=Lus10019141 locus=Lus10019141.g ID=Lus10019141.BGIv1.0 annot-version=v1.0 ATGAGAAAATTCCGTCAGTCTTTTCTCATCCTCAAAGCATTCCGTCGTGCCGATACCATCTCCTCCGTTAGTAAAGCTTCTTCAGTTTCGCGCAGTTCAC CGAACATTGGTTTCCTTTCTCAACGTCCTCGTCCAAATTTTCCCAACTTCATCTTCACTACTTCACGCTCGTATTGTTCCGAATCGGCTATATGTGAGCA ACAAACGCTTACCGCGACTCAGAGACGCAATCTTAGAGAACTCGACACTGATAGAGTTTGTGAAACTATAGCTGGAACTTCTTCCGATTCATTGCATCCC AAGCAGAATCTTCATATGGAGGAAGCACTCGATCAGCTTGGTTTACAGCTCACTACTGATTTGGTCCTCGATGTTCTATACAGGCTTCGTTCTGACGAAA AGATGGCTTTCAGATTCTTTACATGGGCAGGAAGGCAGCAAGATTATGTCCACGAGGATTCTGCTTATAATGAGATTATGGACATTTTGTCAAGCACCAG GTACAAAGTGAAGCAGTTCAGGATCGTGTGCGATATGCTTGATTACATGAAGAGGGCCAATAGGAGCAGCGTCCCTGTTGAGGTTTTGTTGAAGATTTTG AAGGAGTACACCCTGAAGTACCTAACTCATGTTCAGAAATTTGCTAAGAAGAAGAGGATTAGGGTGAAGACTCAACCGGAAATCAATGCTTTTAACTTGC TGCTCGATGCTTTGTGCAAGAGTTGTTTGGTTGAGGATGCTGAAGCTTTGTTAAACAGGATGAAGAGCAAGGTTAAGCCTGATGGAAATACATACAACAT ACTGTTTTTTGGGTGGTGTAGGGTTAGGAATCCAACTCGAGCTATGAAAGTTCTTGATGAAATGGTTGAACTCGGCCTCGCACCTGATAGTTTTACTTAC ATTACAGCTATAGATACGTTTTGCAGAGCTGGTATGGTGGATGAGGCAGCTGAATTATTCGAATTCATGAGAACGAAAGGTTCGACTTTGTCTTCCCCTA CTGCGAAAACTTACGGGATAATGATTGTAGCTCTGGTTCAGAATGATAGAATGGATGAGTGCTTGGAACTCATAGGGCATATGACTGCAAGTGGCTGTCT CCCGGATGTCCCAACGTACAATGAAATGATCGAAGGAATGTATATGGCTGGCAAGGTAGATGAAGCGTACCGGTTTTTGCAAGAGATGGGAGATAAAGGT TATCCTCCTGACATTGTTACTTATAATTGTTTGCTAAACGTACTCTGCAAGAATAAAGAAGCCGATGAAGCACTCAAGCTTTATGGGAAAATGATCGAGG CGGGATGTTTGCCTAGTGTGCAGACATATAATATGCTGATTTCCATGTATTTTAAGATGGATGATTATGAAGGTGCATGTGAGACTTGGGACGAAATGGA AAAGAGAGGCTGTGGACGGGATGTCGATACTTATTCTGTGATGATAGATGGATTGTTTCATTGCAATAAGATTGAGGATGCATGTTTTCTTATAGAAGAC CTTGTTGATAAGGGAATGAAATTGCCTTACAAGCAGTTTGACTCTTTCCTGATGCAGCTTTCCGTAACTGGTAATCTAAAAGCCATCCACAAACTCTCGG AGGCAATGAGGAAGTTCTATAATCCTTCCATGGCTAGGCGCTTCGCACTTAATCAGAAGCGTAAAAGCCTGAGTTTTAAAGGAAGGAAGAGCATATGA
AA sequence Show only first row Show all	>Lus10019141 pacid=23141719 polypeptide=Lus10019141 locus=Lus10019141.g ID=Lus10019141.BGIv1.0 annot-version=v1.0 MRKFRQSFLILKAFRRADTISSVSKASSVSRSSPNIGFLSQRPRPNFPNFIFTTSRSYCSESAICEQQTLTATQRRNLRELDTDRVCETIAGTSSDSLHP KQNLHMEEALDQLGLQLTTDLVLDVLYRLRSDEKMAFRFFTWAGRQQDYVHEDSAYNEIMDILSSTRYKVKQFRIVCDMLDYMKRANRSSVPVEVLLKIL KEYTLKYLTHVQKFAKKKRIRVKTQPEINAFNLLLDALCKSCLVEDAEALLNRMKSKVKPDGNTYNILFFGWCRVRNPTRAMKVLDEMVELGLAPDSFTY ITAIDTFCRAGMVDEAAELFEFMRTKGSTLSSPTAKTYGIMIVALVQNDRMDECLELIGHMTASGCLPDVPTYNEMIEGMYMAGKVDEAYRFLQEMGDKG YPPDIVTYNCLLNVLCKNKEADEALKLYGKMIEAGCLPSVQTYNMLISMYFKMDDYEGACETWDEMEKRGCGRDVDTYSVMIDGLFHCNKIEDACFLIED LVDKGMKLPYKQFDSFLMQLSVTGNLKAIHKLSEAMRKFYNPSMARRFALNQKRKSLSFKGRKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	0	1
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	1.0	0.8813
AT3G46220			unknown protein		Lus10040874 [exp]	6.0	0.8112
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	7.9	0.8124
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	8.8	0.8176
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	9.2	0.7962
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	10.1	0.7360
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	10.2	0.7643
AT2G24530			unknown protein		Lus10026225 [exp]	10.2	0.7789
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	14.5	0.8077
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	15.5	0.7685

Compare expression of checked genes

Lus10019141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.