Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72890 141 / 6e-37 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT3G44670 133 / 6e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 132 / 1e-32 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72910 128 / 1e-32 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT3G44630 130 / 4e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 130 / 4e-32 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72950 125 / 7e-32 Disease resistance protein (TIR-NBS class) (.1) AT5G17680 129 / 1e-31 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72940 124 / 2e-31 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G41750 128 / 3e-31 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006928 [exp] 306 / 3e-98 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042020 [exp] 258 / 3e-80 AT1G72890 147 / 3e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10018024 [exp] 223 / 7e-67 AT5G18350 108 / 2e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006929 [exp] 155 / 7e-44 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10014671 [exp] 155 / 9e-44 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 156 / 1e-40 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10032101 [exp] 145 / 2e-38 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10026845 [exp] 140 / 6e-38 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012063 [exp] 136 / 6e-37 AT5G36930 124 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017082 [exp] 164 / 3e-43 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 162 / 1e-42 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 158 / 5e-42 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 159 / 1e-41 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 155 / 2e-41 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 154 / 2e-41 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 154 / 3e-41 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 157 / 5e-41 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 156 / 7e-41 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 155 / 2e-40 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10019142 pacid=23141790 polypeptide=Lus10019142 locus=Lus10019142.g ID=Lus10019142.BGIv1.0 annot-version=v1.0 ATGGTTTTCATCTCAGAAGAAGATGTTCATGATCAGCCATCCCGAGAATTCCGATCACCCAGTCCTGATTCGCCGCCCACGGTTCGACTCCTCGAAAAGT ACGACGTCTTCCTCAACTTCAGAGGGTTGGACCTCCGGAACAAGTTCGCTGACCATCTCTACGAGAAGCTCAACCAGCATCACGATATCATCGTTTTCAG GGACGACAAGAAGCTTCCGAAGGGGGAGCCCCTCCGAAAAATATTCGAAGTAATCGAACGGTCAACGATGTCCGTGGTCTTGCTCTCCAAGAAATACGCG GGGTCAAAGTGGTGCCTAGACGAGTTGGTAAAGATCGCCGACTGCGTCGAGAGGAAGAAACACGTCGCGCTTCCGGTCTTCTACGACGTTTCGCCTGAGG ACGTGAAGGGGAAATCGGGGGTTTATGCGAAGGCCCTCAAAGGACTTGGCAAGAAGCATTCGGCGTCGAGGGTTGATGGTTGGAGGAAAGCGTTGACCAC CGTTGCAGGAACCGCAGCATGGGAACATGCCCCAGACAAATCAGATGTAAAACTAGCAAAAGAGATATGGAGTACCATAGTATATATGCTAAGGGATATT CACGCAAGAATCGACTCGAAACTGATCAAAGGCTTCACATCACCAAAGCAAATCAACAGCCTATACTCATTGGAAGAACATCAAGACATCACCATCATCA GGATCTGCGGATCCCACGGCTCTGGAAGCGCCAACTCAGCCAAACTCGTATACGACCATTCACTCGGACGGACTGGATTATCCAACCGAAACGGTCATAA CCCTACCCAACCGGTCGATCAGCTGCCACTGATTTGGAGCGCTCAGATGTGGCACGAAGATGGGGACATACACGCGTTACGAAGGAGACATGCTAGGGAC AAGAAGAAGGTACTAGCCATTGTCGAAGATATGGCGAGGCTACGTGATGTCCTGCATTTCGCTGCAAAGAATGGTTGGTTCGGTCCGGGTAGCAGGATCG TGGTCTCGACCGCTAATGCTTCTAAGAAGGTTCTGGAAGTCGTGCGGATTGACATGGAGGCACGAGGCGGACACAATGATTATAATTATGATCAGTATGT TGACGTGGCTTGCTTCATTGATGACGTCGGCGGGGATATGATAATGATGAAAGTGCAGAGTTTTCTGGCTGCTGCCGGTTTGTCACCGGAAATTGTTGTG AAGTTTTATAAATACGAGTTGGAGAACATTGTATTGATGGATAACAAACGGAAGTTGGAAATTGCCACGCAGCGGCAGCCGGCGGATCAGGTGAGTAATG ATGGAACACCGTTGGCCGGCGACGACGGCGTGATGCCACCGCGTAAGGAGTCAAGAGTGGTGGACTGTTTTGTAAGTTTGTTTGGCTACCTTTGGTTCTC GCTTTGCTTTAGGGATACTCGTTGTTTAGAATGA
AA sequence Show only first row Show all	>Lus10019142 pacid=23141790 polypeptide=Lus10019142 locus=Lus10019142.g ID=Lus10019142.BGIv1.0 annot-version=v1.0 MVFISEEDVHDQPSREFRSPSPDSPPTVRLLEKYDVFLNFRGLDLRNKFADHLYEKLNQHHDIIVFRDDKKLPKGEPLRKIFEVIERSTMSVVLLSKKYA GSKWCLDELVKIADCVERKKHVALPVFYDVSPEDVKGKSGVYAKALKGLGKKHSASRVDGWRKALTTVAGTAAWEHAPDKSDVKLAKEIWSTIVYMLRDI HARIDSKLIKGFTSPKQINSLYSLEEHQDITIIRICGSHGSGSANSAKLVYDHSLGRTGLSNRNGHNPTQPVDQLPLIWSAQMWHEDGDIHALRRRHARD KKKVLAIVEDMARLRDVLHFAAKNGWFGPGSRIVVSTANASKKVLEVVRIDMEARGGHNDYNYDQYVDVACFIDDVGGDMIMMKVQSFLAAAGLSPEIVV KFYKYELENIVLMDNKRKLEIATQRQPADQVSNDGTPLAGDDGVMPPRKESRVVDCFVSLFGYLWFSLCFRDTRCLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72890			Disease resistance protein (TI...		Lus10019142 [exp]	0	1
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	3.6	0.9612
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	6.9	0.9519
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029185 [exp]	10.3	0.9108
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	12.2	0.9343
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	12.6	0.9531
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	15.0	0.9317
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	18.4	0.9497
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	20.3	0.9485
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	20.4	0.9491
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	23.2	0.9412

Compare expression of checked genes

Lus10019142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.