Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70780 167 / 3e-54 unknown protein AT1G23150 162 / 3e-52 unknown protein AT5G37730 99 / 1e-26 unknown protein AT2G01554 50 / 8e-09 unknown protein AT2G27830 49 / 2e-07 unknown protein AT4G22758 49 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034416 [exp] 269 / 2e-94 AT1G70780 168 / 8e-55 unknown protein Lus10031920 [exp] 209 / 2e-70 AT1G70780 172 / 4e-56 unknown protein Lus10035084 [exp] 196 / 2e-65 AT1G70780 171 / 7e-56 unknown protein Lus10017628 [exp] 99 / 4e-27 AT5G37730 102 / 3e-28 unknown protein Lus10027525 [exp] 94 / 7e-25 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 93 / 1e-24 AT1G70780 104 / 4e-29 unknown protein Lus10009131 [exp] 83 / 6e-21 AT1G70780 92 / 1e-24 unknown protein Lus10033584 [exp] 57 / 2e-11 AT5G37730 78 / 2e-19 unknown protein Lus10020544 [exp] 51 / 2e-08 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131600 [exp] 182 / 4e-60 AT1G70780 183 / 2e-60 unknown protein Potri.010G110800 [exp] 178 / 8e-59 AT1G70780 188 / 9e-63 unknown protein Potri.017G125300 [exp] 114 / 2e-33 AT1G70780 109 / 2e-31 unknown protein Potri.004G089700 [exp] 111 / 6e-32 AT5G37730 108 / 1e-30 unknown protein Potri.004G188600 [exp] 55 / 6e-10 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 51 / 2e-08 AT2G27830 183 / 6e-59 unknown protein Potri.003G116300 [exp] 49 / 2e-07 AT2G27830 125 / 2e-36 unknown protein Potri.003G116200 [exp] 44 / 9e-06 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 40 / 0.0003 AT4G22758 117 / 5e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019143 pacid=23141771 polypeptide=Lus10019143 locus=Lus10019143.g ID=Lus10019143.BGIv1.0 annot-version=v1.0 ATGTTGCTTCACAAGACGAAGAAGAACCAGGGTGGCAACCGTCTACTAGTTAGCGTGACCGTTCTAGGCAGCGCTGGACCGATCCGGTTCGTGGTGAGGG AGAAGGAGCTTGTGGCTGCTGTTATCGTCACGGCGCTGAAGTCCTACGCTCGCGAGGGGCGGCTTCCGGTGCTCGGCTCTAATCTCAACGATTTCTTCCT ATACTGTCCGAGTGCTGGCTCGGGAGCTCTGTGTCCTTGGGAGACTATCGGATCCGTAGGTTGCCGGAACTTCATGCTGTGCAAGAAGTCGACCGAGATG AAGATGAAGACGGCCGAAGAAGCTGTAAGGACTTCTTCGCCTTCATCAGCTGTTGTACGCAAGGGGAGTGGTGGGAGATGGAAGACGTGGATCAACAAGT CTTTCAATCTCAGGATTTATTCTCATTGA
AA sequence Show only first row Show all	>Lus10019143 pacid=23141771 polypeptide=Lus10019143 locus=Lus10019143.g ID=Lus10019143.BGIv1.0 annot-version=v1.0 MLLHKTKKNQGGNRLLVSVTVLGSAGPIRFVVREKELVAAVIVTALKSYAREGRLPVLGSNLNDFFLYCPSAGSGALCPWETIGSVGCRNFMLCKKSTEM KMKTAEEAVRTSSPSSAVVRKGSGGRWKTWINKSFNLRIYSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70780			unknown protein		Lus10019143 [exp]	0	1
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	2.8	0.9393
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	5.3	0.9377
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	5.5	0.9275
AT3G07425			unknown protein		Lus10020406 [exp]	7.4	0.9039
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	9.8	0.9367
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10014472 [exp]	10.6	0.8903
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	11.8	0.9095
					Lus10023559 [exp]	13.0	0.9280
AT4G39520			GTP-binding protein-related (....		Lus10005800 [exp]	13.5	0.9311
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10019856 [exp]	14.4	0.9047

Compare expression of checked genes

Lus10019143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.