Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 483 / 4e-170 F-box/RNI-like superfamily protein (.1) AT1G32375 98 / 3e-22 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22610 94 / 1e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 92 / 2e-20 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56370 87 / 2e-18 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56420 84 / 2e-17 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56690 84 / 2e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G22670 83 / 4e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G61330 82 / 9e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G56390 82 / 1e-16 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034414 [exp] 803 / 0 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 535 / 0 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10030569 [exp] 187 / 2e-54 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 185 / 1e-53 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 156 / 5e-43 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 143 / 1e-37 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 140 / 4e-37 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 132 / 4e-34 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 128 / 5e-32 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 649 / 0 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 527 / 0 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 292 / 3e-95 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 274 / 5e-88 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 221 / 1e-67 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 89 / 9e-19 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 87 / 2e-18 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 78 / 6e-16 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 79 / 1e-15 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.017G092301 [exp] 77 / 5e-15 AT1G13570 66 / 2e-11 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain CL0271 [flax] [poplar] PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10019144 pacid=23141784 polypeptide=Lus10019144 locus=Lus10019144.g ID=Lus10019144.BGIv1.0 annot-version=v1.0 ATGGAGGAGATTGAGTTTCCGGACTTGATAACTGATCTGCCTCAGAGCATCTTGGAGAGCATTCTCTCCAGATTGCCCATAAGGGATGCTGTAAGAACAA GCATACTCTCAACCAAATGGAGGTACCGTTGGACTATACTTAGCCAGCTAGTTTTCGACGACAGCTGTGTTGACGCCTGCAGTGAGAGGTCATTGGTTCA GAGCAACCTTATAAGCTTTGTAACACACACATTGTTTCTTCATGAAGGACCAATTCACAAGTTCCAGCTCAGTACTTCGTACTTGCAATGCTGTCCCGAT TTAGATCAGTGGCTTCTGTTTCTTTCAAGAACCGATGTTAAGGAGCTGATTCTTGAGCTAGGAGAGTGTGAATGGTTCAGAATACCGTCCTCTCTCTTTA ACTGCAAAAGGTTGACCCGTCTAGAGCTATGTCGATGTGAATTCAACCCCCCGCCAAGTTTTAAAAGCTTTCCGTATTTGAGAAGCCTCAATCTTTATGA GGTTCTCATTGGTCGGGAGGCAATCGAGAGTCTTATCTCTAATTGCCCGCTCTTGGAAAGTCTTTCGTTATCATACTTTGATAGCCTAGCCCTCACTATC CGTGCTCCAAATCTCAAGTACTTGTGCTTGGAAGGTGATTTCACAGATATATGCCTGGAAAATACTCCAAATTTGCTTGCCTTGTCAATTGCTGTGTATA TGACTGAAGACACTGCTGAGCAATTGGATCAAAGCTCCTGTTGCAACTTCATCAACTTTCTCGGCGGTGTTCCTCTTCTTGAGAGACTCATTGGTCATAT CTACTTTACAAAGTACTTGAGTGTAGGTTATCCAGGAAAGCTTCAGATTACATACAGCCACCTCAGAGTTGTTGAACTATATCAAGTAAGTTTCGAGGAT ATGAAAGAGATTTCGGTCGTTCTTCGCTTGATCACCAATGCTCCTAACTTAACCGAATTTAGAATCTCGGGCTCTTCAAACACAGTAGCTGCTATGGAAG CACCTAATTTGGCATTCTGGGCAGAAGAGTGCCCTAAAGATTTCATCTTTAAACAGCTCAGCCATGTAAAGATGACTGACATGTCTGGTGTACCCCATGA GATGGAGCTGATCAAGTTCTTGCTAGCGAATTCACCGGCATTGGAGACGATGAGCATCACATCTTCTATATATGATGGCAGGTTGGACATATTGATTGAG TTGCTGAAGTTTCGCCGCGCTTCTCCTGACGCTGAGATCTCATTCCTCAAAGATTGA
AA sequence Show only first row Show all	>Lus10019144 pacid=23141784 polypeptide=Lus10019144 locus=Lus10019144.g ID=Lus10019144.BGIv1.0 annot-version=v1.0 MEEIEFPDLITDLPQSILESILSRLPIRDAVRTSILSTKWRYRWTILSQLVFDDSCVDACSERSLVQSNLISFVTHTLFLHEGPIHKFQLSTSYLQCCPD LDQWLLFLSRTDVKELILELGECEWFRIPSSLFNCKRLTRLELCRCEFNPPPSFKSFPYLRSLNLYEVLIGREAIESLISNCPLLESLSLSYFDSLALTI RAPNLKYLCLEGDFTDICLENTPNLLALSIAVYMTEDTAEQLDQSSCCNFINFLGGVPLLERLIGHIYFTKYLSVGYPGKLQITYSHLRVVELYQVSFED MKEISVVLRLITNAPNLTEFRISGSSNTVAAMEAPNLAFWAEECPKDFIFKQLSHVKMTDMSGVPHEMELIKFLLANSPALETMSITSSIYDGRLDILIE LLKFRRASPDAEISFLKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10019144 [exp]	0	1
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	7.2	0.6942
AT3G54120			Reticulon family protein (.1)		Lus10027756 [exp]	7.3	0.6671
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	14.3	0.6637
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	14.5	0.6380
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10042136 [exp]	23.4	0.6408
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	23.6	0.6555
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	25.3	0.6494
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	52.0	0.6405
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	52.0	0.6108
AT3G57200			unknown protein		Lus10042032 [exp]	53.7	0.6270

Compare expression of checked genes

Lus10019144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.