Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16000 871 / 0 NIK1 NSP-interacting kinase 1 (.1) AT3G25560 846 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 701 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G60800 685 / 0 NIK3 NSP-interacting kinase 3 (.1) AT4G30520 678 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G45780 580 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 555 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 513 / 1e-175 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT4G33430 501 / 2e-171 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G65240 474 / 1e-160 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034413 [exp] 1158 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 879 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 857 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10030591 [exp] 748 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 746 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10015484 [exp] 705 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 704 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 550 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020962 [exp] 534 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110300 [exp] 978 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 946 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.004G108200 [exp] 900 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 882 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G188800 [exp] 745 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G043200 [exp] 731 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.006G179400 [exp] 695 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 679 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 602 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 592 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019145 pacid=23141767 polypeptide=Lus10019145 locus=Lus10019145.g ID=Lus10019145.BGIv1.0 annot-version=v1.0 ATGGAAGCAAGAAGAAACATCAATGGAGGTGGTTTCTGCTACTTTGGCTTGTTCTCTTTGTTTCTGTTCTGCTGGTGGAGTGGTTCAGCTTCTGGAATGT TGTCTCCCAAGGGGGTCAACTTTGAAGTGATCGCTTTGATGGATATAAAAAATGCATTAAAAGATCCTCACAATGTTCTGAACTGGGATGCAACTGCTGT TGATCCATGCAGCTGGAGCATGGTCACTTGTTCTCCTGATGGTTTTGTTACTGGCCTAGGAGCTCCAAGCCAAAGTCTTTCTGGAACTCTTTCACCAAGC ATAGGGAACTTGACAAATATCCAGCTTGTGCTTCTGCAGAATAACAACATTTCAGGTCATATACCAGCTGAGCTTGGGAGGGTCACAAGGTTGAAAACTC TTGACCTTTCTAACAATTTCTTCAACGGTCAAGTCCCAAGCAGCTTATCCAATCTCAAAAGCCTACAATACTTGAGGCTGAACAACAATAGTCTAACTGG AGCAATTCCTCCTCCTTTGGCTAACATGACACAGCTCACTTTTCTGGACTTGTCTTACAATAATCTGAGTGCTCCAATACCCACTTTCCATACCAAAACA TTCAACATTCTGGGGAACCCCATGATATGTAAAACTGAGGAGGATTGCTTTGGAACAACACCAACTCCACAATCACTATTCATCAATAACACACAAAATT CTCAGCCTTCTGGGGGTAACAAGGGACACAAAATTGCCTTAGCTTTAGGCACAAGCCTTGCTGGCATCTGTCTGTTGGCTTTAGGCTTAGCTTTCTTACT TAAGTGGAGGCAGAGGCGCAACCAACAGATATTCTTTGATGTCAATGATCGACACGAGGAGCTGAACCTTGGAAACCTCAAGAGATTTCCTTTCAAGGAG CTTCTGGTGGCTACAAACAAGTTTAGCAGCAAGAACTTGATAGGGAAAGGTGGGTTTGGCAATGTCTACAAAGGATACCTCTCAGACGGGACGCTTATAG CAGTGAAACGACTGAAAGATGGGAATGCTATTGGCGGTGAGATCCAATTCCAGACTGAAGTAGAGATGATAAGCTTGGCAGTCCACCGGAATCTCCTCCG CCTCTATGGTTTCTGCATGGCTGGTTCCGAGAGGTTACTGGTCTATCCTTATATGTCGAATGGAAGTGTGGCAACAAGGCTCAAGGCGCAACCGGGATTG GATTGGGGCACAAGGAAAAGGATTGCAATAGGAGCTGCCAGAGGTTTGCTATACTTGCATGAGCAATGTGATCCCAAGATCATCCACAGAGATGTGAAGG CTGCAAACATATTGCTGGATGATTACTGCGAAGCTGTGGTGGGAGATTTCGGCCTAGCTAAGTTGTTGGATCACCGGGATTCGCATGTAACCACAGCTGT GAGAGGAACTGTGGGGCACATAGCTCCTGAGTATCTCTCCACAGGTCAATCCTCGGAGAAAACCGATGTTTTCGGGTTTGGTATCCTTTTGCTCGAGTTG ATCTCTGGCTTAAGAGCTCTCGAATTCGGGAAATCTGCTAACCAGAAAGGAGTCATGCTTGAATGGGTTAGGAAGATTCACCAGGAAAAGAAGCTTGATA TGTTGGTTGACAAGGATCTGAAGAGCAACTACGATAGAATCGAGCTCGAAGAAATGGTACAAGTTGCCTTGTTATGCACTCAATACCTGCCGAGTCACAG ACCGAAAATGTCAGAAGTGGTTCGAATGTTAGAAGGAGACGGCCTTGCTGAGAAATGGGAAGCTTCTCAGAGAGCTGAAGCTACAAGATCAAGAGCTAAC AACGATTTCTCGTCCTCGGAGAGATACTCCGATCTTACTGACGACTCTTCAGTTCTCGTCCAGGCGATGGAGCTCTCTGGTCCGAGATGA
AA sequence Show only first row Show all	>Lus10019145 pacid=23141767 polypeptide=Lus10019145 locus=Lus10019145.g ID=Lus10019145.BGIv1.0 annot-version=v1.0 MEARRNINGGGFCYFGLFSLFLFCWWSGSASGMLSPKGVNFEVIALMDIKNALKDPHNVLNWDATAVDPCSWSMVTCSPDGFVTGLGAPSQSLSGTLSPS IGNLTNIQLVLLQNNNISGHIPAELGRVTRLKTLDLSNNFFNGQVPSSLSNLKSLQYLRLNNNSLTGAIPPPLANMTQLTFLDLSYNNLSAPIPTFHTKT FNILGNPMICKTEEDCFGTTPTPQSLFINNTQNSQPSGGNKGHKIALALGTSLAGICLLALGLAFLLKWRQRRNQQIFFDVNDRHEELNLGNLKRFPFKE LLVATNKFSSKNLIGKGGFGNVYKGYLSDGTLIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMAGSERLLVYPYMSNGSVATRLKAQPGL DWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLEL ISGLRALEFGKSANQKGVMLEWVRKIHQEKKLDMLVDKDLKSNYDRIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEATRSRAN NDFSSSERYSDLTDDSSVLVQAMELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040064 [exp]	3.9	0.9171
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	4.7	0.9270
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	4.8	0.9307
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	5.1	0.8952
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	8.1	0.9127
AT5G67550			unknown protein		Lus10011544 [exp]	9.0	0.9259
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10000642 [exp]	9.3	0.8912
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	9.5	0.9109
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	10.0	0.9201
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	11.2	0.8955

Compare expression of checked genes

Lus10019145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.