Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25570 478 / 6e-169 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 452 / 8e-159 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 447 / 1e-156 Adenosylmethionine decarboxylase family protein (.1.2) AT5G18930 270 / 2e-87 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) AT3G25572 59 / 3e-11 CPuORF11 conserved peptide upstream open reading frame 11 (.1) AT3G02468 59 / 3e-11 CPuORF9 conserved peptide upstream open reading frame 9 (.1) AT5G15948 52 / 5e-09 CPuORF10 conserved peptide upstream open reading frame 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000156 [exp] 810 / 0 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 806 / 0 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 645 / 0 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 639 / 0 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 382 / 1e-130 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 257 / 2e-82 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 252 / 2e-80 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10035082 [exp] 62 / 2e-12 AT5G15948 72 / 3e-19 conserved peptide upstream open reading frame 10 (.1) Lus10031918 [exp] 62 / 2e-12 AT5G15948 72 / 3e-19 conserved peptide upstream open reading frame 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G133900 [exp] 542 / 0 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.017G108800 [exp] 494 / 4e-175 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 479 / 2e-169 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.018G101500 [exp] 358 / 4e-121 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 261 / 3e-84 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 257 / 2e-82 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G133850 [exp] 62 / 2e-12 AT3G02468 70 / 3e-18 conserved peptide upstream open reading frame 9 (.1) Potri.018G101400 [exp] 61 / 7e-12 AT3G02468 61 / 1e-14 conserved peptide upstream open reading frame 9 (.1) Potri.017G108901 [exp] 58 / 1e-10 AT5G15948 67 / 3e-16 conserved peptide upstream open reading frame 10 (.1) Potri.004G106750 [exp] 57 / 1e-10 AT3G02468 64 / 6e-16 conserved peptide upstream open reading frame 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [flax] [poplar] SAM_decarbox Adenosylmethionine decarboxylase PF08132 [flax] [poplar] AdoMetDC_leader S-adenosyl-l-methionine decarboxylase leader peptide
Representative CDS sequence Show only first row Show all	>Lus10019146 pacid=23141787 polypeptide=Lus10019146 locus=Lus10019146.g ID=Lus10019146.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAAGGTGGCAAGAAGAAGTCTAGCAGTAGTAAATCCTTCTACGAAGCCCCCCTCGGTTACAGCATTGAAGACGTTCGCCCAAACGGTGGAA TCGAGAAGTTCAGATCTGCTGCATACTCCAACTTTCAGTCAACCTCTTCTCTCCCTCCCTCTCTCTGCGACTACCATCACCTTATAACTTGTGAGCTTTC CGGAATCTTCGACAATCTATTGCTAGTTTTTACGATGGCAGTCTCTGCAATTGGATTTGAGGGATTTGAGAAGAGGCTAGAAATATCTTTCTTTGAGCCT GGTGTGTTTGCTGATCCTGAAGGAAAGGGCCTCCGATCTCTTTCGAAGGCTCAGCTGGATGATATTCTTGGACCGGCTCAGTGCACTATTGTTGACTCGC TTGCAAATGAGCAACTAGACTCCTATGTCCTCTCTGAATCTAGCCTCTTTGTGTACTCTTACAAGATCATCATCAAGACATGTGGGACGACTAACCTGCT CTTGTCGATTCCACCTATCCTTAAATTGGCTGACTCCCTGTCGCTGAAGGTGAAGTCAGTGAGGTATTCTCGTGGGAGCTTCATCTGTCCCTCAGCACAA CTATATCCCCATCGCAGCTTCTCTGAGGAAGTTTGCGTACTTGATGGCTACTTTGCTAAGCTTGATTCTGGCAGCAAGGCATACGTCATGGGAGGATGGG ATGAACAACAAAAGTGGCATGTTTACTCTGCATCTGCCGATTCTGGTCTGATCGATGAACCTATTTACACTGTGGAGATGTGCATGACTGGTCTGGACAG AGAAAAGGCTGCAGTGTTCTTCAAAACCCAGTCTCCTTCTGGAGCTGTGATGACCGTAGACTCTGGCATAAGAAAGATTCTTCCAGACTCTGAGATCTGT GATTTTGATTTTGACCCTTGTGGTTATTCAATGAATGCTATTGAAGGCGATGCTGTATCGACCATCCACGTGACTCCAAAAGACGGGTTTAGCTATGCAA GCTTTGAAATGATGGGATATAACCCCCAGGAAGTGGACCTCAACGGAGTGGTGAAAAGAGTGCTGGCTTGCTTCAAGCCCAGTGAGTTCTCTGTAGCTGT GCATGCAAATGTTGCTTCTGGGAAGCAAATGGAGCAGGCATGTTTGCTGGATGTAAAGGGGTATCGTCGCGGAGAGAGGAGCCTTGAGGAGCTTGGAATG GGTGGCAATATTGTCTATCAGAAGTTTGAAGTGTCTGGGGAGAGTGAATCTCCCAGATCAACTCTGAAGTGCTGTTTTAAGGAGGAAGATGAGGAATTTT AA
AA sequence Show only first row Show all	>Lus10019146 pacid=23141787 polypeptide=Lus10019146 locus=Lus10019146.g ID=Lus10019146.BGIv1.0 annot-version=v1.0 MESKGGKKKSSSSKSFYEAPLGYSIEDVRPNGGIEKFRSAAYSNFQSTSSLPPSLCDYHHLITCELSGIFDNLLLVFTMAVSAIGFEGFEKRLEISFFEP GVFADPEGKGLRSLSKAQLDDILGPAQCTIVDSLANEQLDSYVLSESSLFVYSYKIIIKTCGTTNLLLSIPPILKLADSLSLKVKSVRYSRGSFICPSAQ LYPHRSFSEEVCVLDGYFAKLDSGSKAYVMGGWDEQQKWHVYSASADSGLIDEPIYTVEMCMTGLDREKAAVFFKTQSPSGAVMTVDSGIRKILPDSEIC DFDFDPCGYSMNAIEGDAVSTIHVTPKDGFSYASFEMMGYNPQEVDLNGVVKRVLACFKPSEFSVAVHANVASGKQMEQACLLDVKGYRRGERSLEELGM GGNIVYQKFEVSGESESPRSTLKCCFKEEDEEF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	0	1
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	1.4	0.8901
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	1.7	0.8994
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	2.4	0.8536
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	4.6	0.8731
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	6.7	0.8413
AT4G35750			SEC14 cytosolic factor family ...		Lus10021230 [exp]	7.1	0.8262
AT2G48020			Major facilitator superfamily ...		Lus10027976 [exp]	7.9	0.8301
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	11.3	0.8683
AT3G52230			unknown protein		Lus10037916 [exp]	11.5	0.8381
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	13.2	0.8244

Compare expression of checked genes

Lus10019146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.