Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13190 240 / 6e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55670 152 / 3e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G04600 56 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 54 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21660 52 / 1e-07 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G13850 50 / 3e-07 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT2G43370 52 / 7e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 48 / 8e-07 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G26420 50 / 1e-06 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT3G20930 50 / 3e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039103 [exp] 538 / 0 AT1G13190 424 / 2e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038759 [exp] 534 / 0 AT1G13190 378 / 1e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038757 [exp] 274 / 3e-88 AT5G55670 148 / 4e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038758 [exp] 219 / 3e-68 AT5G55670 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014814 [exp] 53 / 6e-07 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10026344 [exp] 50 / 8e-07 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 50 / 8e-07 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10028714 [exp] 52 / 9e-07 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10031534 [exp] 49 / 9e-07 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182500 [exp] 375 / 1e-121 AT1G13190 224 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G051600 [exp] 360 / 6e-116 AT1G13190 198 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G207100 [exp] 54 / 9e-08 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.006G208500 [exp] 51 / 2e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 50 / 2e-07 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 50 / 6e-07 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.002G061200 [exp] 52 / 1e-06 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.001G319900 [exp] 49 / 1e-06 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.009G116400 [exp] 49 / 1e-06 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.017G059000 [exp] 48 / 2e-06 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019147 pacid=23141749 polypeptide=Lus10019147 locus=Lus10019147.g ID=Lus10019147.BGIv1.0 annot-version=v1.0 ATGGCTGATGATAAAATTGATTTTGAGGATGAGGAATATGGAAGTGCTCAGAAATTGCAGTACCAAGGAAGTGGTACAATTCCTGCGCTTGCAGAGGAAG AGATGGATGAAGATGATGAGTATGATGATCTTTACAATGATGTGAATGTTGGTGAGAATTTCCTACAAATGCATCGATCTGATCCAGCAGCCCCACCTGC TAATACGAGTAATGGGGCAGTCCAAAGTCAGAATACTTCTGAATCAAAATCGGCTACTGATGGTGGTGGTGCTGGTTCGCAAGGAGTGCAAATACCTGGA GTTGCTGCTGATACGAAGTATTCTAATCCTGCAGCCCATTTCCAAGAGGAAAAGGAGGTTCCTGGGATAGTCAAGGGACCAGAAAAAGGATCGGTTGACT ACCCAGATGGACCTGCTTCACAAGAAGGAAAGGTGATGGATATGACACATGATGCTCAAGTTGGGAATATGGGTTTTCGAGGGCCAGCAGCAATATCTTC CGATATTGCAGTTAACCCGTCTGATATGACAAGGAAAGTTCCCATTGAACTGCCTTCTATGCCTAGTGCCGGAACAGGTAATGTCACAGGCGTTCCACAG ATGCCTTCTAATCATATGAATATAAATATGGATGCCAATGCCATCAATGAAAATCAGATCAGGCCTCCTATACAGAATGGTTCAACTATGCTGTTTGTTG GAGAATTGCATTGGTGGACGACAGATGCAGAGCTTGAGAGTGTTTGTTCTCAATATGGAAGGGTCAAGGAGATCAAATTCTATGATGAAAAAGCTAGTGG TAAATCTAAGGGCTATTGCCAAGTTGAATTTTACGAGGCAGCTTCTGCAGCCTCTTGCAAAGAAGGAATGAATGGCTTTTTGTTTAACGGCCGAGCTTGT CTTGTTGCATTTGCTAACCCGCAATCAATAAAGCAAATGGGAGCATCTTACACTAACAAAAATCAGAATCAGCCAAAAGCACAGACACAAGGAAGGAGAC CTATGAATGATGGTGCTGGGAGGGGTGGCTCCATGAATTTTCCAGCTGCAGATGGTGGTAGAAACTTTGGAAGGGGGGGTGGATGGGGACGTGGTGCACC TGGTGTTCTTGGAGGTCCAATTAGAGGAAGAGGAGGCATGGGTGGTAAGGGTATGTTAGGGGGCGCTGCTGGAGTTGGGGCTGGTTTGAATGGTGGAGGT TATGGACAGGGCTTTGGCGGTCCTGCATTTGGTGGTCCTGGTGGAATGATGCCTCCACATGCTATGATGGGTGCTGGATTTGATGCAGCATACATGGGTA GAGGGGCTGGTTATGGAGGATTTGGGGGAGGTCCTGGATTTCCAGGCATGCTCCCTTCATTTCCTGATGTTAATACGATGGGACTTGCTGGTGTGGCTCC TCATGTCAACCCAGCATTCTTTGGCCGTGGGATGGCTTCAAATGCTATGGGGATGATGGGTGGCTCTGGAATGGAAGGGCCTGGCATGGGAATGTGGTCT GAGACAAGTATGGGTGGATGGGGAGAAGAGCATGGAAGAAAGACGCGGGAGTCAAGCTACGGTGCTGAAGATGGTGCATCTGACTACGGTTATGGGGAGG CAAATCAAGAAAAGGGCGGACATTCAAGTGCTGCCCCTCGACAAAAAGAAAGATCTTCTGCACGTGATATGCCAGGAGCCTCTGAAAGGAGGCATCGCGA TGAGAGGGAGCAGGACTGGGATAGATCAGAAAGGGATCACAGAGAGTCCCGTTACAAGGAGGAAAAAGATAGTTATAGAGATCACCGAAAGAGAGAACGT GATTCAGGTTATGAGGATGATTGGGACAGGGGGCAATCTTCTTCGAGGCAACAAAGTAGGTCTCGTGCAATGCCAGAAGATCACAGGTCGCGTTCAAGGG ATGTGGATTATGGCAAGAGGAGACGTGTGCCATCAGATTGA
AA sequence Show only first row Show all	>Lus10019147 pacid=23141749 polypeptide=Lus10019147 locus=Lus10019147.g ID=Lus10019147.BGIv1.0 annot-version=v1.0 MADDKIDFEDEEYGSAQKLQYQGSGTIPALAEEEMDEDDEYDDLYNDVNVGENFLQMHRSDPAAPPANTSNGAVQSQNTSESKSATDGGGAGSQGVQIPG VAADTKYSNPAAHFQEEKEVPGIVKGPEKGSVDYPDGPASQEGKVMDMTHDAQVGNMGFRGPAAISSDIAVNPSDMTRKVPIELPSMPSAGTGNVTGVPQ MPSNHMNINMDANAINENQIRPPIQNGSTMLFVGELHWWTTDAELESVCSQYGRVKEIKFYDEKASGKSKGYCQVEFYEAASAASCKEGMNGFLFNGRAC LVAFANPQSIKQMGASYTNKNQNQPKAQTQGRRPMNDGAGRGGSMNFPAADGGRNFGRGGGWGRGAPGVLGGPIRGRGGMGGKGMLGGAAGVGAGLNGGG YGQGFGGPAFGGPGGMMPPHAMMGAGFDAAYMGRGAGYGGFGGGPGFPGMLPSFPDVNTMGLAGVAPHVNPAFFGRGMASNAMGMMGGSGMEGPGMGMWS ETSMGGWGEEHGRKTRESSYGAEDGASDYGYGEANQEKGGHSSAAPRQKERSSARDMPGASERRHRDEREQDWDRSERDHRESRYKEEKDSYRDHRKRER DSGYEDDWDRGQSSSRQQSRSRAMPEDHRSRSRDVDYGKRRRVPSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10019147 [exp]	0	1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	2.0	0.9672
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	4.9	0.9597
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	5.7	0.9634
AT5G20600			unknown protein		Lus10027609 [exp]	7.2	0.9485
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	8.4	0.9369
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10016516 [exp]	9.2	0.9302
AT4G03180			unknown protein		Lus10040902 [exp]	10.1	0.9230
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	10.8	0.9431
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	10.9	0.9453
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	11.0	0.9305

Compare expression of checked genes

Lus10019147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.