Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57030 123 / 4e-34 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41290 102 / 3e-26 SSL2 strictosidine synthase-like 2 (.1) AT1G08470 100 / 2e-25 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 99 / 4e-25 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 88 / 5e-21 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57010 87 / 1e-20 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 85 / 6e-20 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 82 / 1e-18 SSL1 strictosidine synthase-like 1 (.1) AT1G74020 74 / 4e-16 SS2 strictosidine synthase 2 (.1) AT1G74010 74 / 5e-16 Calcium-dependent phosphotriesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034411 [exp] 314 / 5e-110 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 146 / 2e-43 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006331 [exp] 138 / 3e-40 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 132 / 6e-38 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10012095 [exp] 105 / 3e-27 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10008451 [exp] 102 / 6e-26 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 93 / 2e-22 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 93 / 2e-22 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10013370 [exp] 79 / 2e-17 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109966 [exp] 172 / 4e-53 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 172 / 4e-53 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 131 / 4e-37 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 130 / 9e-37 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 123 / 2e-34 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.017G027600 [exp] 101 / 6e-26 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.007G130700 [exp] 101 / 1e-25 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 99 / 4e-25 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.006G140500 [exp] 61 / 2e-11 AT3G51430 170 / 2e-49 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.012G046200 [exp] 55 / 2e-09 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10019148 pacid=23141773 polypeptide=Lus10019148 locus=Lus10019148.g ID=Lus10019148.BGIv1.0 annot-version=v1.0 ATGGACAGAACAGGGAAGGTAATGAGCTACGATCCACACACCAAGAAGCTAACGGTTCTAGTGGACGGGCTAGGATTCCCAAACGGTGTAGCTCTGAGTA AAGACAACTCCTTTCTTCTAGTTGCAGAGACAAGCACCCTCAGCATCCTCAAGCTCCCTCTAATCAACAACACCAACAACAGGATCGAGCTTTTTGCCCA GCTGGACAGATTCCCGGACAACATAAAGAGGAATCCCAAAGGGGACGGGTTCTGGGTCGCATTGAACTCCGGCAGGGGCAAGATTACTGTACCGGAATCA GAACAAAAAGCAGAGCATGTTGATGTCGATCCGGTGGGTGTGAAGCTGAGTGAAGATGGGGAAGTAGTGAAGGTGTTGGACGGCGGCGGTGGGGATGCTT TGAATTCCGTCAGTGAAGTTTTGGAAGACGGGAATGGTAATCTCTGGGTTGGCTCTGCTGTTCACTCCTTTGTTGGCCGGATTCAGTAA
AA sequence Show only first row Show all	>Lus10019148 pacid=23141773 polypeptide=Lus10019148 locus=Lus10019148.g ID=Lus10019148.BGIv1.0 annot-version=v1.0 MDRTGKVMSYDPHTKKLTVLVDGLGFPNGVALSKDNSFLLVAETSTLSILKLPLINNTNNRIELFAQLDRFPDNIKRNPKGDGFWVALNSGRGKITVPES EQKAEHVDVDPVGVKLSEDGEVVKVLDGGGGDALNSVSEVLEDGNGNLWVGSAVHSFVGRIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	0	1
					Lus10007554 [exp]	1.0	0.9716
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	1.4	0.9626
					Lus10020978 [exp]	3.0	0.9610
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	3.5	0.8956
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	3.5	0.9274
					Lus10023333 [exp]	3.7	0.8748
					Lus10018224 [exp]	4.0	0.9607
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	5.0	0.9340
					Lus10004849 [exp]	5.3	0.9215
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	6.0	0.9199

Compare expression of checked genes

Lus10019148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.