Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13560 478 / 5e-165 AAPT1, ATAAPT1 aminoalcoholphosphotransferase 1 (.1.2) AT3G25585 460 / 2e-158 AAPT2, ATAAPT2 aminoalcoholphosphotransferase (.1.2.3.4) AT5G42450 447 / 2e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 299 / 2e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 278 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 280 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 278 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 271 / 4e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 271 / 5e-81 SLO1 SLOW GROWTH 1 (.1) AT3G02010 272 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034408 [exp] 726 / 0 AT5G42450 538 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034410 [exp] 368 / 7e-123 AT3G25585 509 / 0.0 aminoalcoholphosphotransferase (.1.2.3.4) Lus10015898 [exp] 310 / 5e-95 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 303 / 4e-93 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 288 / 4e-86 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012796 [exp] 277 / 6e-85 AT2G36980 516 / 1e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 285 / 1e-84 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 281 / 2e-84 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 282 / 3e-84 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213200 [exp] 514 / 1e-176 AT5G42450 545 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G109833 [exp] 477 / 3e-164 AT1G13560 684 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.T031036 [exp] 473 / 1e-162 AT1G13560 682 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.010G133800 [exp] 475 / 4e-162 AT1G13560 695 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.007G104700 [exp] 313 / 2e-96 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 289 / 4e-89 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.012G048800 [exp] 293 / 2e-88 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G217600 [exp] 286 / 3e-88 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 287 / 4e-87 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.016G038400 [exp] 285 / 1e-86 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019149 pacid=23141745 polypeptide=Lus10019149 locus=Lus10019149.g ID=Lus10019149.BGIv1.0 annot-version=v1.0 ATGGATGCCGTATATTCACCCCATTTGGATACAGCTCCGCCAAGATGGGTTCACTTCGCACATGGATTACTGTTGTTCTTGTATCAGACATTTGATGCTG TTGATGGAAAGCAAGCACGGAGAACCAACTCTTCCAGTCCATTGGGCGAACTGTTTGACCATGGATGCGATGCTCTTGCATGTGCATTTGAAGCCATGGC TTTCGGCAGCACTGCTATGTGTGGAAGATATACTTTTTGGTTCTGGGTCATCTCAGCTATTCCATTTTATTTAGCAACATGGGAAAGCCATGTTCAGATT GCCGGCACCTCCATTCTGCTGACCGTTTATGTTCTCATATTGTCCATTTGTAGTTATTTCACCAATACTCTCATTCTTCCCGTGGTGAATGGGCCTACGG AGGGTCTGATGCTCATCTATCTTGCTCATTTCTTCACGGCCATAGTGGGTGCTGAATGGTGGGCTCAGCAATTTGGACAGTCTTTGCCCATAGTGAGTTG GGTGCCATTTGTTAGTGTGATACCTACAATTTACTCCAATGTGACGAATGTTAACAAAGTTGTTCAGGCTAGAAAGGGCAGTATGCCACTGGCCTTAGCA ATGATTTATCCCTTCGTGGTGCTGATGGGAGGCATCCTGGTTTGGAGTTATTTGTCCCCATCTGACATAATGGGAAATTATCCTCATTTAGTTGTTCTGG GAACTGGACTAGCATTTGGCTTTCTTGTGGGGAGAATGATTCTCGCTCACTTGTGTGATGAACCAAAAGGGTTGAAAACCAACATGTGCATGTCCCTCTT GTTTCTACCTTTGGCGGTTGCAAATGCACTGACAGCCAAACTGAATGACGGAGTTCCATTGGTAGATGAGTTCTGGGTTCTTCTTGGTTATTGTGCATTC ACAGGATTCAACTCCGTAGTCTTTGTCGGGACTGCATTGCTAGACTTTTACGCCAAGTTAGTTTCATTAGATGAAGCTGTAAGGGGTTTTGAGGATATAA ATTATCCAAATGTTGTTTCTTACACAACTCTGGTACATGGCTACCTGAAGAAAGGCTTATGCAAGGATGCTATCCGCCTCTTTGATCAAATGCCAGAGAG GAATGTGGTGTCCTGGAACATGATGATTGGCGGGCTCAGCCAAATGGGTTACAATGAAGAGTCTGTAAATCTCTTTGTCCAGATGATGAGAGAACGTTTG ATCCCGGATGAACTCACCTTTCCTGGTGCTGTAATCGCTGCTTCGAATGTAGCAGCAATGGGAATTGGGAAGAGCTTCCATGCTTGTGCTGTTGAAACAA ACTGTGTTCTTGATGTGTTCGTTGCAAACTCTTTGATTAGCTTCTATGCAAAATGTGGGAGTATGGAGGATAGTCTGCTTGTCTTTGACGAAATTACTGA ACGGAGCGTTGTCTCTTGGAATGCTGTGATTTGTGGGTTTGCTCAGAATGGGAGAGGAAATGATGCTGTCAAATGTTTCAACAGGATGTTGGTATCAGGT TTTCAGCCTAACGATGTCACGGTTTTGGGGGTGTTATGGGCTTGCAACCACTCCGGTCTCGTTGATGATGGCTATTCGCATTTCAAGGAAGCAAGAATCA AGAACCCAAGTGCTTTGAAGCCTGAGCATTATGCGTGTATGGTCGATCTACTTTCTCGTTGTGGCCGGTTCAAGGAGGCAGAGGAGATCATCCGAAATAT GCCCTTTGATCCGGGGATTGGATTCTGGAAGGCGGTTCTCGGAGGGTGTCGAATGCATTCAAACGCGGAATTGGGAGAAGTGGCGACACATAAGATATCG GGGTTGGATCCTGGTGATGTTTCGTCCTACGTGATGCTGTCTAATGCATATGCCGCGGCTGGGAAATGGCGGGATGCCTCGGGTGTGCGGAGGGAGATGA AGGAGAAAGGGATGGTGAGGGTTAGTGGGTGCAGTTGGATTGAAATCAGAAGCAGAGTTCATGTTTTTGTCAGTAGAGATGTGAATCATGAGAGCAAGGA TGAGATTTACTTGATGCTCAAGTTTTTGGTGGAGCTGTTGAGAGAAACCAGTAGCATATTTGAACAGGATTATATATGA
AA sequence Show only first row Show all	>Lus10019149 pacid=23141745 polypeptide=Lus10019149 locus=Lus10019149.g ID=Lus10019149.BGIv1.0 annot-version=v1.0 MDAVYSPHLDTAPPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFEAMAFGSTAMCGRYTFWFWVISAIPFYLATWESHVQI AGTSILLTVYVLILSICSYFTNTLILPVVNGPTEGLMLIYLAHFFTAIVGAEWWAQQFGQSLPIVSWVPFVSVIPTIYSNVTNVNKVVQARKGSMPLALA MIYPFVVLMGGILVWSYLSPSDIMGNYPHLVVLGTGLAFGFLVGRMILAHLCDEPKGLKTNMCMSLLFLPLAVANALTAKLNDGVPLVDEFWVLLGYCAF TGFNSVVFVGTALLDFYAKLVSLDEAVRGFEDINYPNVVSYTTLVHGYLKKGLCKDAIRLFDQMPERNVVSWNMMIGGLSQMGYNEESVNLFVQMMRERL IPDELTFPGAVIAASNVAAMGIGKSFHACAVETNCVLDVFVANSLISFYAKCGSMEDSLLVFDEITERSVVSWNAVICGFAQNGRGNDAVKCFNRMLVSG FQPNDVTVLGVLWACNHSGLVDDGYSHFKEARIKNPSALKPEHYACMVDLLSRCGRFKEAEEIIRNMPFDPGIGFWKAVLGGCRMHSNAELGEVATHKIS GLDPGDVSSYVMLSNAYAAAGKWRDASGVRREMKEKGMVRVSGCSWIEIRSRVHVFVSRDVNHESKDEIYLMLKFLVELLRETSSIFEQDYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10019149 [exp]	0	1
AT3G27240			Cytochrome C1 family (.1)		Lus10041579 [exp]	7.1	0.6830
AT1G35220			unknown protein		Lus10036488 [exp]	10.3	0.7662
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	22.7	0.7187
AT1G75140			unknown protein		Lus10007163 [exp]	27.1	0.7189
AT3G13410			unknown protein		Lus10009853 [exp]	28.4	0.6745
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10000031 [exp]	60.8	0.6581
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	92.8	0.6153
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	196.3	0.5943

Compare expression of checked genes

Lus10019149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.