Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04240 60 / 7e-12 XERICO RING/U-box superfamily protein (.1.2) AT1G15100 59 / 2e-11 RHA2A RING-H2 finger A2A (.1) AT1G67856 56 / 2e-10 RING/U-box superfamily protein (.1) AT2G01150 55 / 4e-10 RHA2B RING-H2 finger protein 2B (.1) AT3G61460 54 / 9e-10 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 53 / 2e-09 RING/U-box superfamily protein (.1) AT5G41400 52 / 9e-09 RING/U-box superfamily protein (.1) AT3G62690 52 / 9e-09 ATL5 AtL5 (.1) AT4G38140 51 / 9e-09 RING/U-box superfamily protein (.1) AT3G51325 49 / 1e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034407 [exp] 186 / 6e-62 AT2G04240 61 / 2e-12 RING/U-box superfamily protein (.1.2) Lus10007936 [exp] 58 / 2e-11 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 57 / 8e-11 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10032290 [exp] 56 / 2e-10 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 56 / 3e-10 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10008283 [exp] 56 / 3e-10 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10017510 [exp] 53 / 3e-09 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10036378 [exp] 53 / 5e-09 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 52 / 5e-09 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G133300 [exp] 69 / 1e-15 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133200 [exp] 69 / 1e-15 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G047100 [exp] 66 / 3e-14 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.007G086200 [exp] 62 / 8e-13 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.010G133700 [exp] 61 / 9e-13 AT3G61460 66 / 4e-14 brassinosteroid-responsive RING-H2 (.1) Potri.008G185800 [exp] 61 / 1e-12 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.005G081300 [exp] 61 / 4e-12 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086300 [exp] 60 / 7e-12 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 59 / 1e-11 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.014G170400 [exp] 56 / 1e-10 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10019150 pacid=23141768 polypeptide=Lus10019150 locus=Lus10019150.g ID=Lus10019150.BGIv1.0 annot-version=v1.0 ATGTCGAAATTCTTCAATCTGATCTCCACCCAACTCCAACAGGTTCTGGAATTCTTGAATTCCAATCCCAGACAGCTCGGAAGAAATTCCGAAATGGGAA AACAGAGTTCATCTGGCCTCTGCCACTACTGCTACTACAGCGGCGGCAGCAACAACTCAGAATTACAAGACTGCTCAATCTGTCTGGCCAAGATCCAGCA ACGGGAACAAGTTACCAAATTGAGGTGCACCCATTTGTTCCACAGAGCTTGCTTGGACCGATGGTTCGGATCATCCGGCTTGACTTGCCCCCTTTGCCGG GACAACTTGGCTCTCACCGCTGCCGCCGCCGACGGCGGAGGAGTTCATGTCTTGGAGCTGCGGTTCGTGAGTGCTACTAGTTTGCGATCCTCGGACGACC GGGACTCCCTTTGGTTACGATGA
AA sequence Show only first row Show all	>Lus10019150 pacid=23141768 polypeptide=Lus10019150 locus=Lus10019150.g ID=Lus10019150.BGIv1.0 annot-version=v1.0 MSKFFNLISTQLQQVLEFLNSNPRQLGRNSEMGKQSSSGLCHYCYYSGGSNNSELQDCSICLAKIQQREQVTKLRCTHLFHRACLDRWFGSSGLTCPLCR DNLALTAAAADGGGVHVLELRFVSATSLRSSDDRDSLWLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10019150 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	7.3	0.8773
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	11.2	0.8668
AT1G49310			unknown protein		Lus10040476 [exp]	30.9	0.8697
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	36.0	0.8377
AT4G20820			FAD-binding Berberine family p...		Lus10032943 [exp]	47.2	0.8533
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	56.4	0.8342
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	56.5	0.8515
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	57.7	0.8251
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	70.3	0.8362
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	71.2	0.7967

Compare expression of checked genes

Lus10019150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.