Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006880 [exp] 153 / 2e-44 ND / Lus10028682 [exp] 143 / 2e-39 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10000860 [exp] 135 / 1e-36 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10003922 [exp] 118 / 2e-30 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 119 / 5e-30 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003923 [exp] 100 / 4e-24 ND 40 / 0.002 Lus10036954 [exp] 76 / 2e-15 ND 48 / 5e-06 Lus10014682 [exp] 71 / 3e-14 ND 37 / 0.006 Lus10037105 [exp] 52 / 5e-08 ND 44 / 1e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 48 / 5e-06 AT5G49610 65 / 3e-11 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019151 pacid=23141797 polypeptide=Lus10019151 locus=Lus10019151.g ID=Lus10019151.BGIv1.0 annot-version=v1.0 ATGGCTTGCTCTTGTGCCCCCCACATAAATCCTTGCCCGACTCGTACTACGTTTGTAACCCGCTCACGAAGCAGTGTTGTCATCCTTCCACCATCTCCTT GCTGTCATTATGACATGGTGGACCACTTCATCTGCGATCCATCGTTCTATCGTGTGGAGGATGATGGTAGCTTTCGCAGCTTCGATAACGATTTTGGTTT CCATGTGGTACGTTGGAAGCACCTTGAAGGGAAAGGAAATCTCTTGTGGATGTATGTTGAGAGATTCTCATCCATAACTGGATGTTGGACTACATCTAGG ATGCAATGGCCAAGAAGATTTGCTCTGGTGGAAGACTTTATTGGTTGCTTGAACCATGTCGGTTTTTTATACGACCCTAGCTCAAATGAAATTTATGTGC AGCCAATTGAAATTCCTTCTAGCTCGTTTCATGATTTGGAGCCTGATGATGACGAGGATTATTATTTCGTAGAACTTAGCCAATGCAGAGGCTCATTGTG GGTAGGTCAAGTTTGGGATTCGGAACTCGGGGTGTACGCACACTCTGATGCTGGTGAATGGTCTCTGAAGCATCAGGTTCGTATCATAGATCAGTTGCAG TTGCTCTGCTTCTCAAGTTCAGCAATAGAGACCTTAAGGCGTGAGTCTGACATGGTTAGTTTTCAAACCATGCATCCAAGTGATCCAATGGTAGCATATT TGATTGCGGAGAGTATAGTTCTGGAGTGCAACTTTGGAGCCAGAACATTGAAAGTTGTTGCAGAGAATTTGGATGAGAATGGGGAGATTCCCTTATTTTC CTACTGGCATGGTGTGTTGACATTTGATCTTCCACATTGGCCCACGCCTGTTCCAAAATTTCCCTGCTTCTTCTTAGCTACTTAA
AA sequence Show only first row Show all	>Lus10019151 pacid=23141797 polypeptide=Lus10019151 locus=Lus10019151.g ID=Lus10019151.BGIv1.0 annot-version=v1.0 MACSCAPHINPCPTRTTFVTRSRSSVVILPPSPCCHYDMVDHFICDPSFYRVEDDGSFRSFDNDFGFHVVRWKHLEGKGNLLWMYVERFSSITGCWTTSR MQWPRRFALVEDFIGCLNHVGFLYDPSSNEIYVQPIEIPSSSFHDLEPDDDEDYYFVELSQCRGSLWVGQVWDSELGVYAHSDAGEWSLKHQVRIIDQLQ LLCFSSSAIETLRRESDMVSFQTMHPSDPMVAYLIAESIVLECNFGARTLKVVAENLDENGEIPLFSYWHGVLTFDLPHWPTPVPKFPCFFLAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019151 [exp]	0	1
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	1.0	0.9991
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	2.0	0.9968
					Lus10012079 [exp]	3.5	0.9907
					Lus10009892 [exp]	4.0	0.9901
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	4.9	0.9571
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	5.5	0.9678
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10023446 [exp]	5.5	0.9853
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10039087 [exp]	5.5	0.9873
AT1G09600			Protein kinase superfamily pro...		Lus10000170 [exp]	5.6	0.8852
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	5.9	0.9779

Compare expression of checked genes

Lus10019151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.