Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25610 1842 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1837 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1786 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 1731 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 1581 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1387 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1385 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 1383 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1368 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 1020 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035069 [exp] 1969 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1845 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1576 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1385 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1379 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1377 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1346 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1328 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10034404 [exp] 1208 / 0 AT3G25610 969 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058000 [exp] 1833 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1775 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1751 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1522 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1352 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1347 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1249 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 1025 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 1023 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 673 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10019152 pacid=23141720 polypeptide=Lus10019152 locus=Lus10019152.g ID=Lus10019152.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGTAAAAAGAGAATAAGGCTGAGCAGGTTGTACTCCTTCAGATGCGGGAAAGCATCATTTGTGGATGACCATTCCCAGATTGGTGGGCCTG GATTCTCAAGGGTGGTATTTGCAAACGAGCCGGATTGCTTTGAAGCTGGGATCCGGAACTATGGTGACAACTATGTCAGCACCACTAAGTACAACGTTGC AACTTTCTTCCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTTGCAAATTTCTACTTCTTGGTCACTGGGATCTTGTCCTTCACCGCTTTGGCGCCTTAC AGCGCTGTTAGTGCTATTATACCTCTCATCGTTGTTATTGCAGCTAGTATGGGTAAAGAAGGGATTGAAGATTGGCGACGCAAACAGCAGGATACTGAGG TGAACAATAGGAAGGTGAAAGTTCATGAAGGAGACGGGGTATTCAGAGAAACTGAATGGAAGAATTTGCGAGTTGGAGATATAGTTAAGGTGGAGAAAGA TGGATTTTTCCCTGCAGATTTACTCCTGCTGTCCTCAAGTTATGAGGATGGAATCTGCTATGTTGAAACGATGAACCTTGACGGAGAGACGAATTTGAAG CTCAAACAAGGGCTTGAGTCGACTTCGGTCTTGCACGAAGAATCTGACTTCACCAACTTCAAATCTCTTATCAAATGCGAGGACCCGAACGCGAACTTGT ACACCTTTGTTGGAACTTTGGAGCATGAGGAGAACCAATTTCCCCTCACGCCTCAGCAGCTTCTCCTCAGAGACTCGAAGCTTAGAAACACAGACTTCAT TTACGGGGTGGTTGTGTTCACGGGGCTTGATACAAAGGTGATGCAAAATGCTACAGCTCCTCCGTCAAAGAGAAGCAAGATCGAAAAGAAGATGGACCAA ATCATCTACTTCTTGTTTGGTGTAGTGTTCTTGATGGCATTCATTGGGTCTATTTTCTTCGGTATCTCGACAAAAGAGGACTTGAAAGATGGAAGGATGA AGAGGTGGTATCTTAAACCAGATGATTCTGAAATCTTCTTTGATCCTAAAAAAGCATTTGCCGCTGCAGCACTTCACTTCCTGACTGCGATAATGTTGTA TGGTTATTTCATCCCCATCTCGCTCTATGTTTCTATAGAAATCGTGAAAGTTCTTCAGAGCATCTTCATCAATCGAGACATTCATATGTATTATGAGGAG ACTGATAAACCAGCACACGCCAGGACCTCAAATTTGAATGAGGAACTTGGGCAGGTTGATACGATACTTTCAGATAAAACCGGGACTCTGACCTGCAATT CTATGGAGTTCATCAAGTTCTCATCAGCCGGGACTGCTTATGGCCATGGGGTAACAGAAGTTGAGAGGGCTATGGAAAGAAAGACAGGCACTCCCGTTAG GCTCTCCGGTTTGGAGGGATATATTGAGTCTAAGAATAACATCCCGATCAAAGGCTTTAACTTCGAAGATGGACGAGTTATGAATGGAGAATGGAGAAAT CAGCCCAATGCTGATGTCATACAGAAATTTTTGCGATTATTGGCCGTCTGTCACACAGCCATACCTGAAGTTGATGAAGATACTGAGAAAGTAACCTACG AGGCCGAATCACCTGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTTGGTTTCGAATTTTATAAACGGACTCAGACAAGCATCTCAGTGCGCGAGTT GGATCTCGTTTCAGGGAATAAAGTCGATAGGGTGTATACCCTTTTGAACGTTTTGGAATTCAACAGCACAAGAAAAAGAATGTCTGTGATAGTAAGGGAC GAGGATGGAAAGCTAATGTTACTCTCTAAAGGAGCCGACAATGTAATGTTCGAAAGGCTGGCCAAGGGTGGTAGGCAGTTTGAAAAGGAGACGAGGGAAC ATGTAAATCAATATGCTGATGCAGGCCTTAGGACTCTGATACTTGCCTACCGTGAACTCGATGAACATGAATACGATAACTTCAATTCGAAGTTCAATGC TGCGAAAACTTCTGTAAGTGCAGATCGGGAAACTTTGATCGAAAAAGTGGCAGCGGATGTGGAGAAGGATCTAATACTCCTTGGTGCAACTGCTGTTGAG GACAAACTCCAAGAAGGGGTTCCTGACTGCATAGACAAGCTAGCCCAAGCAGGAATTAAGATATGGGTTTTGACAGGAGACAAAATGGAAACTGCCATAA ACATTGGGTTTGCGTGTAGTTTGCTTAGACAAGGAATGACACAGATTATAATCAATGTCGAGCTCCCAGAACTGCAAGCATTAGAAATCGCTGGAGATAA GGCAACAATTAATAAGATATCGAAAGAGCATGTTTTACGTCAGATAATGGAAGGGAAAAAGCTAGTGGCTGGATCAGGTGCTGGCCTTGATGCATTTGCA TTGATAATTGATGGGAAGTCACTCACCTACGCTCTGGAAGATGATGTCAAGAACTTGTTCCTGGAACTTGCTGTCAGTTGTGCATCTGTCATTTGTTGCC GATCATCGCCCAAACAGAAGGCTCTGGTTACAAGATTGGTGAAAAATGGAACTGGTAAAACAACATTAGCTGTTGGTGATGGTGCCAATGATGTCGGTAT GCTTCAGGAAGCGGATATTGGTGTTGGAATTAGTGGTGTTGAAGGAATGCAGGCTGTCATGTCGAGTGATGTTTCCATTGCTCAATTTCGGTACTTGGAG CGTTTGCTACTCGTGCATGGACATTGGTGTTACAGGAGGATATCATCAATGATCTGTTACTTCTTCTACAAGAATGTCATATTCGGAATCTCTCTATTCT TGTACGAGGCATATGCATCATTCTCGGGACAAACTTTGTACAACGACTGGTTTCTCTCACTTTACAACGTCTTCTTCACGTCACTTCCGGTTATCGCTTT GGGCGTTTTCGACCAGGATGTTCCATCCCGCCTTGCAATTAAGTTTCCTCTGCTATACCAAGAAGGGGTGCAGAACGTACTCTTCAGCTGGCGTCGGATA ATCACTTGGATGGTCAATGGCGTGTACAGCGCGATAATGATCTACTTTTTCTGCATAAAAGCGATGAGGAGCCAAGCCTTCAACGATGACGGGAGGACAG CAGGACGAGAGGTCCTAGGAGCAACAATGTACACATGCATCGTCTGGACCGTAAACTTGCAGATGGCACTCTCCATCAACTACTTCACCGTGCTACAACA CATATTGATATGGGGTTCCATCGCATTCTGGTACATTTTCCTCATGATCTACGGAGCCATGTCTCCGGACTTTGCCCAAAACGCCTACAAGCTCTTCCTG GAAGCACTAGCGCCAGCACCTTCATACTGGCTGATCACGATGTTCGCTGTGGTGTCGGCACTAATACCGTACTTCTCCTACTCGGTAATCCAAATGAGGT TCTTCCCCATGTACCATCAAATGATACAATGGATAAGGCACGAGGGGCAGTCAGAGGACCCCGAGTTCTGCCACATGGTTCGACAGAGGTCGATAAGGCC AACGACAGTCGGGTTCACAGCACGTGTAGCAGCTCGATCGAGGTCGAGCAGCAGAAGAGAAGAGAACCCGTTTCAAGCATAG
AA sequence Show only first row Show all	>Lus10019152 pacid=23141720 polypeptide=Lus10019152 locus=Lus10019152.g ID=Lus10019152.BGIv1.0 annot-version=v1.0 MGGGKKRIRLSRLYSFRCGKASFVDDHSQIGGPGFSRVVFANEPDCFEAGIRNYGDNYVSTTKYNVATFFPKSLFEQFRRVANFYFLVTGILSFTALAPY SAVSAIIPLIVVIAASMGKEGIEDWRRKQQDTEVNNRKVKVHEGDGVFRETEWKNLRVGDIVKVEKDGFFPADLLLLSSSYEDGICYVETMNLDGETNLK LKQGLESTSVLHEESDFTNFKSLIKCEDPNANLYTFVGTLEHEENQFPLTPQQLLLRDSKLRNTDFIYGVVVFTGLDTKVMQNATAPPSKRSKIEKKMDQ IIYFLFGVVFLMAFIGSIFFGISTKEDLKDGRMKRWYLKPDDSEIFFDPKKAFAAAALHFLTAIMLYGYFIPISLYVSIEIVKVLQSIFINRDIHMYYEE TDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKFSSAGTAYGHGVTEVERAMERKTGTPVRLSGLEGYIESKNNIPIKGFNFEDGRVMNGEWRN QPNADVIQKFLRLLAVCHTAIPEVDEDTEKVTYEAESPDEAAFVIAARELGFEFYKRTQTSISVRELDLVSGNKVDRVYTLLNVLEFNSTRKRMSVIVRD EDGKLMLLSKGADNVMFERLAKGGRQFEKETREHVNQYADAGLRTLILAYRELDEHEYDNFNSKFNAAKTSVSADRETLIEKVAADVEKDLILLGATAVE DKLQEGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMTQIIINVELPELQALEIAGDKATINKISKEHVLRQIMEGKKLVAGSGAGLDAFA LIIDGKSLTYALEDDVKNLFLELAVSCASVICCRSSPKQKALVTRLVKNGTGKTTLAVGDGANDVGMLQEADIGVGISGVEGMQAVMSSDVSIAQFRYLE RLLLVHGHWCYRRISSMICYFFYKNVIFGISLFLYEAYASFSGQTLYNDWFLSLYNVFFTSLPVIALGVFDQDVPSRLAIKFPLLYQEGVQNVLFSWRRI ITWMVNGVYSAIMIYFFCIKAMRSQAFNDDGRTAGREVLGATMYTCIVWTVNLQMALSINYFTVLQHILIWGSIAFWYIFLMIYGAMSPDFAQNAYKLFL EALAPAPSYWLITMFAVVSALIPYFSYSVIQMRFFPMYHQMIQWIRHEGQSEDPEFCHMVRQRSIRPTTVGFTARVAARSRSSSRREENPFQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	0	1
AT5G04250			Cysteine proteinases superfami...		Lus10038708 [exp]	1.7	0.9013
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10025733 [exp]	3.5	0.8955
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	3.9	0.8959
AT5G25930			Protein kinase family protein ...		Lus10012949 [exp]	6.2	0.8833
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	6.3	0.8989
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	7.5	0.8833
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	12.1	0.8999
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	15.1	0.8516
AT3G19615			unknown protein		Lus10042265 [exp]	16.6	0.8991
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	16.7	0.8369

Compare expression of checked genes

Lus10019152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.