Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68720 295 / 1e-82 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT5G28050 82 / 2e-17 Cytidine/deoxycytidylate deaminase family protein (.1.2) AT1G48175 81 / 3e-17 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) AT3G05300 62 / 3e-11 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034402 [exp] 1554 / 0 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10028482 [exp] 76 / 3e-15 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10009163 [exp] 74 / 2e-14 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10001791 [exp] 72 / 5e-14 AT5G28050 288 / 7e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10015942 [exp] 70 / 2e-13 AT5G28050 288 / 3e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132600 [exp] 351 / 1e-101 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.008G111100 [exp] 333 / 3e-95 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.006G075300 [exp] 78 / 5e-16 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Potri.005G049300 [exp] 76 / 2e-15 AT5G28050 281 / 4e-98 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.013G036000 [exp] 73 / 2e-14 AT5G28050 275 / 1e-95 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.010G003500 [exp] 72 / 7e-14 AT5G28050 267 / 2e-92 Cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10019153 pacid=23141831 polypeptide=Lus10019153 locus=Lus10019153.g ID=Lus10019153.BGIv1.0 annot-version=v1.0 ATGCACAACACTTACATTAGTAGCTCAACGCTACTCTCAATTGGTACTCATAATGATTGCTCCAACTTATTCTGTCAAAGATTTGAGAAAATCCCATTTC CCTTATCATCTCCTCGAACACAATCACAATGTTGTTGCTGCTGTGCTTGCTGTTCTTGCTGTGCTTCGTCATCATCATTATCCTCTTCATTTGCAATCCA ACCCAGTTACTTGTTGTATGGGTTGAGGCAATCCAGTCTCATTCAATGGACGCCTTCTCGGAGGGTGAATTTGGGTACAAGGCCGCCCCGGTGTTATTAT AACCGGGTCCCGGATTGTGGGTTGGATTTAGGTGGCTATGAGGTTTCTTGCTCCTTTGAAAAGATCAGTGGGAGGAGAAGGCAGGAAAAGAACAACTATA GGCAATTGAATTCACGGCCAATTCGATGTTTGGAAAGTGTGAATGATGATGCTGAGGCTGTGGTTGATTTGTTGAGTGAGGATGTGAGTGATGAGTATCT AGAGCATAGAAGGAAAATAGGCGAATTTTCGGCGAGATTGCACAAGGCGAGGAGGAAAGGGAGTTATTACGCTGGTGAATGTGAAAGCGAGAGGAGGAAG AATTTGAGATTGCGGTTGCTGTCTAGTAAATCCAAGTTCGAGGTTGAGGATTCAACTAACAATGAGTTCAGGAAACAAGGGTCAAGAATGAAGGAAGAGA GGAATGAGAAGAAGAAGGATATTAGGGCAGACAGTGCTAGTTTGTCATCTTATTACTCGATATCCTCCGAGGGGGGATTGGAGAGTGATGATAAGGAGGA GGAAGCTCATGATGAGGAACGGTCTAGTGGTTACATGAATGAGATGGGGGAGAGTAGTTCAGAAGGAGGTCAAGTGGTTAGAGATTTGCAGAGGCGTGAA GATGTTTTTGAGAAGCAAAAGGAGGTTTCAGAACATAGGAGAACGAGCAGTATGGGATGGGATTTGAGAAAGAAATCCGAGAAGAAACTTTCTGACGTTG AGGAATCTGAATACTCAATGCACTTTTTTCCTATGGAATCTGGGCTTGCAAGCAGCCATGATGATGTTCCTCATGAATACAAGGTATTTGATGGTGAGGA AGGATCATCTGTGGCAATTAGTCTGGAGAAAGGTGTGACTTCTCGAACAGCTAAGCAAGCAGTGAAACAATCTGAATTCAGAAGAAATAATCAGCAACCA ACAGATAGGCAAGAGATTTATGAACATACTAAAATTACAGAAATGGGCAAGGTTGGTATAGAAAGAATTTCCAATTATCAGAGGCAGTCTGACTCTAGAA CGAAGATTCAGGAAGAAGCTACCAGCTCACGTTCGGAGACTGGTGGCAAACATGACCAAATGAGCGCAAGGAAAGTGACGGGGCGAACTGAATCCAGAGT GAGTTTGGAAGAAACGCTAGAGGGTCAGCAAAAATATACAGGCAATACGTTTAGCATTTCAGATACAACAATGAAGAACCAGAGAGAAAGCACTAGTTCT TTTCCTGCTTCGGAGTTGGGAGCAAAAGGGCAAAAGTTCCACTCAGATAAGAAAGCAGTTGAGAGAGTTCAATCAAGGAAGATTCCCCAAAATGTGACGA ACTTAACAGTTAATGTCACCAATGCATCTTTGGTCAATACTACCAACACAGAGACAGTGGCGAAGAGATTATCTGAGCAGATAATTACTGATAGAGGAAG TAACACGTTAATTACAGGTCCCATTCAGGAAAGGGGAGGACTTCCTGCTGCAACTGATGAAAACAACTCTCGACTGAAGTTAGTACGGGAGGAACACAGG GATTCTAAAGCCTCTAGCCTTCATAATAGAAGTTCACAAGGGGCCTCTAGTTCTGAGGTAGCGATGCAACAAGTTGACCTGAAGGGGGGCGTGGTCCAGA GAAGACCGGAGGCTGTAATGGTGCCACCATCTCGTCAATTAGTAGGCAGAGGTTCGTTTCGTGTTGATTCAACTGATATGGTTAAAGTTCAAGATGTTTC TGGTGGCTCATATACAAATTCAGGAGAGAATGTCCCTGAAATTCTTCAAGAATCAGAGTATGAAGAATTACAAGGTGAGCAGTATGATGACTCATTGCAT CTCCCTACCCGTGGAGATGCTCTGGGTTCAGCTCGTCTTCTTGAAGCATCATCCATGCAGCATGTTGGGGAGTTTGTTGAGAGGGCAAGGCTTGAAGCGA ATTACGAAACTGATCGTAGTAGGCCAACCAGTTCAGGTCTGTATGGTCCTGAAGACTCGAAGGGGGATAATTCAAGACATTCATCCAAGGATTCTGGCGA AAAGGGCCCCTCTGCCGAAATGTGGGATGTGACGGACCCATATGTTCTTGAACATCCAAAGGTAGACGCACCAGAGGAAAAACTTGAAAGAACCGACCAA GCAGGAACTATTGCTGCTGAAGGTTCTGCAATTAGGAAATCTGGAAGATCCTTGTGGGGTATCATTGGGGATATAGTAAAACTACGCTGGGGTCCTCGTA CCGAGACCTCTAAATCAACTACGAATTCAGGTGGAAAGAGTTCATCAAATGATTCAGCAGGTAGTGAGGCTTGGTTTTCAGGCCATGATCCTGATGAAAC CAGTGAAAGACACATGAAAAGGGGAACAAGCATGCCAAAGAGACACAGTTCTGATAACGTAGTGTTAAGGCCTGCTTCTGGTCATGAGCATGGAGAAGTA TCCGGTACAGGTGATGAATCGATACCTACGATAGGAAGAGATGACGTAGCTATGGTATCTCCTTCGGTAATATTAAGTGGGTCAACAACATCTATGGCAT TTGCTTCGCCTGAGGAAGACCTTGACTGGAGTCCAGATGAAGTCGAAAGCGAGCAGCGTGAAAACGACGAAATATTCATGAGAGAAGCATTGTTAGAAGC GAAGAAGGCTGCAGATACTTGGGAGGTACCTGTTGGTGCTGTGCTTGTACAACACGGGAATATCATAGCTCGTGGCTACAACTTAGTGGAAGAGTTACGC GACTCGACTGCCCACGCCGAGATGATTTGCATCCGTGAGGCTTCGAACCAACTTCGTTCATGGAGGCTTGCGGATACGACACTTTATGTAACCCTGGAAC CATGTCCTATGTGTGCTGGAGCAATCCTTCAAGCAAGGATAGACACCGTCGTATGGGGAGCTCCCAATAAGCTTCTTGGAGCTGATGGAAGTTGGATTCG GCTTTTCCCAAATGGGGAAGGAGGGAACGGGCTGGAAACAGATAAGCCAGCTCCACCGGTCCATCCATTCCATCCGAAAATGACTATTCGACGAGGTGTA CTGGCGACTGAGTGTGCAGACGTGATGAAACAGTTCTTCCAGCTAAGGAGAACAAAAAAGGCGAAGAAGGAAGAGCAGCAGCCTCCCCAGAACTCATTAG TGCAGGTAGTCAATCATCCCTCGAAGATACTGAAGAAGATGCACCATATTTTCCACGTCATGTTCTGCTTGTGA
AA sequence Show only first row Show all	>Lus10019153 pacid=23141831 polypeptide=Lus10019153 locus=Lus10019153.g ID=Lus10019153.BGIv1.0 annot-version=v1.0 MHNTYISSSTLLSIGTHNDCSNLFCQRFEKIPFPLSSPRTQSQCCCCCACCSCCASSSSLSSSFAIQPSYLLYGLRQSSLIQWTPSRRVNLGTRPPRCYY NRVPDCGLDLGGYEVSCSFEKISGRRRQEKNNYRQLNSRPIRCLESVNDDAEAVVDLLSEDVSDEYLEHRRKIGEFSARLHKARRKGSYYAGECESERRK NLRLRLLSSKSKFEVEDSTNNEFRKQGSRMKEERNEKKKDIRADSASLSSYYSISSEGGLESDDKEEEAHDEERSSGYMNEMGESSSEGGQVVRDLQRRE DVFEKQKEVSEHRRTSSMGWDLRKKSEKKLSDVEESEYSMHFFPMESGLASSHDDVPHEYKVFDGEEGSSVAISLEKGVTSRTAKQAVKQSEFRRNNQQP TDRQEIYEHTKITEMGKVGIERISNYQRQSDSRTKIQEEATSSRSETGGKHDQMSARKVTGRTESRVSLEETLEGQQKYTGNTFSISDTTMKNQRESTSS FPASELGAKGQKFHSDKKAVERVQSRKIPQNVTNLTVNVTNASLVNTTNTETVAKRLSEQIITDRGSNTLITGPIQERGGLPAATDENNSRLKLVREEHR DSKASSLHNRSSQGASSSEVAMQQVDLKGGVVQRRPEAVMVPPSRQLVGRGSFRVDSTDMVKVQDVSGGSYTNSGENVPEILQESEYEELQGEQYDDSLH LPTRGDALGSARLLEASSMQHVGEFVERARLEANYETDRSRPTSSGLYGPEDSKGDNSRHSSKDSGEKGPSAEMWDVTDPYVLEHPKVDAPEEKLERTDQ AGTIAAEGSAIRKSGRSLWGIIGDIVKLRWGPRTETSKSTTNSGGKSSSNDSAGSEAWFSGHDPDETSERHMKRGTSMPKRHSSDNVVLRPASGHEHGEV SGTGDESIPTIGRDDVAMVSPSVILSGSTTSMAFASPEEDLDWSPDEVESEQRENDEIFMREALLEAKKAADTWEVPVGAVLVQHGNIIARGYNLVEELR DSTAHAEMICIREASNQLRSWRLADTTLYVTLEPCPMCAGAILQARIDTVVWGAPNKLLGADGSWIRLFPNGEGGNGLETDKPAPPVHPFHPKMTIRRGV LATECADVMKQFFQLRRTKKAKKEEQQPPQNSLVQVVNHPSKILKKMHHIFHVMFCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10019153 [exp]	0	1
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	2.0	0.9130
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	7.5	0.9033
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10035496 [exp]	10.9	0.8293
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	16.5	0.8948
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	16.9	0.8698
AT3G53630			unknown protein		Lus10003983 [exp]	20.2	0.8855
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	20.6	0.8841
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	24.6	0.8769
AT2G16485			nucleic acid binding;zinc ion ...		Lus10018078 [exp]	27.5	0.8478
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	29.3	0.8824

Compare expression of checked genes

Lus10019153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.