Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68740 1027 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 664 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G14040 406 / 3e-130 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 404 / 5e-130 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 400 / 1e-128 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 397 / 4e-127 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 393 / 3e-125 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 387 / 7e-123 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 382 / 3e-121 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 375 / 9e-119 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034400 [exp] 1425 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 718 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 699 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10030439 [exp] 408 / 7e-131 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 404 / 4e-129 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 374 / 7e-118 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 367 / 3e-115 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 346 / 2e-107 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 343 / 6e-106 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132300 [exp] 1154 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 1130 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 698 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 688 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G165300 [exp] 414 / 4e-133 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 406 / 3e-130 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 397 / 8e-127 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 396 / 1e-126 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 390 / 3e-124 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 358 / 4e-112 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10019155 pacid=23141757 polypeptide=Lus10019155 locus=Lus10019155.g ID=Lus10019155.BGIv1.0 annot-version=v1.0 ATGGTGAAATTTTCCAAGCAATTTGAGGGTCAGCTAGTTCCAGAGTGGAAAGAAGCCTTTGTGGATTACTGTAAACTCAAGAAGGACCTTAAGAAGTTCC CAAATCATCATTCATCAACCACTTCCCCAATTAAAAATGGCAGCTGCAGCAGAAGCTACTTTGTTGCTTTGGCTGCAACTGTTAAGAAGTTCTCTCATTT TGGCAATAGAGGCAACAACCATGGAGCTATTCAAGTTCATAAGAAGCTGGCATCTTCCCTTAGTAAAGGGGACATGTATGAGACAGAACTGCTTGATCAG TTTGAGGATTCCGAAGCTGCTAAGGACTTCTTTGCCTGCTTGGACTTGCAGCTTAACAAAGTTAACCAATTCTTCAAGACTAAAGAGAAGGAGTTTTTTG AGAGAGGAGATTGCCTCAAGAAACAAATGAACATCCTCATTGAGCTCAAGACGGCACTCAAAGAGCAGAAAAGCACCAACAACAAGGGTTCTACTGTTGA TCAGGACTCCATGGATGATCCTTCATTTTCCTGCACCATTTCTTGTGAGGACTCTGTTGAGAAAGAGCCGGAAGAAGAGGAGGGGGAGGAGAATGTTTCT GATGAATCGGGGGAGTTAGGGGGGAAGTCAATGAGGGTGAAAAGAGAGGACATAAAGATGAGAACACTTTCAGGGAGAGTGTTCAGTTACCAAGGAAAGA GCTTGAGACTCAACATCCCATTGACAACTCCATTGCGCACCTTCTCTGCAATAAGCTATCTGGTTTGGGGAGATTCTGCTGTTAGCAATCAGTCTTCCTC CAAGAAATGCAACCCTGAAGGAAGCAACAACAGGCTACCTATTCATATCAACAAGACAAAGTTGCATCATGCTGAGAAGATGATTAGAGGAGCTTTCATT GAGCTCTATAAAGGACTAGGATACCTCAAGACTTATAGGAACTTGAACTTGCTAGCTTTCATCAAGATTCTGAAGAAATTTGACAAGGTTACAGGAAAGC AAGTACTTCCAATCTACTTGAGAGTTGTTGAAAGCTCATACTTCAACAGCTCTGACAAGGTGGTGAATCTATCAGATGAAGTTGAGAAACTGTTCATCAA GCATTTTGCTGAAGATGACAGAAGAAAAGCCATGAAGTATCTTAAGCCACAGCAGCGCAAAGAATCACACAGTGTCACATTTTTCATTGGATTATTTACT GGATGCTTCATAGCCCTACTTGCTGGCATGTTCAGCCTCATATTCTTGCATTTCTTCATGTATGGCTGCAACATTTTCATGTGGAGGAAGACAAGGATAA ATTACAGCTTCATATTTGAGCTAGCACCAACCAAGGATCTCAAGTACAGAGATGTGTTCTTGATCTGTACAACTTCGATGACTGTTGTTCTGGGAATTAT GTTTGGTCACTTGTCGCTTATGTCGAAAGGGTACTCGTATTCCCACATTCAAGCCATCCCAGGCCTTCTATTACTGGCCTTCCTATTGTTACTCGTTTGC CCTTTCAACATTTTCTATCAGTCTAGTCGTTATAGGTTCCTCTGTGTCATCAGGAACATCATTTTATCACCACTCTACAAGGTTGTGATGCTGGATTTCT TCATGGCAGATCAGCTATGTAGCCAGGTACCAATGCTTAGGAACCTGGAATATGTAGCCTGCTACTACATAACAGGAAGCTACAAAACACAAGACTACAA CTACTGCATCAGAGCTGGCCACTATCGCGATCTTTCATATGCCGTGTCCTTCCTACCTTACTACTGGCGAGCGATGCAGTGTGCCAGGAGATGGTTTGAT GAAGGGGAAACGAGCCACCTAGTGAATCTAGGAAAATATGTGTCAGCAATGTTGGCAGCAGGAGCCAAAGTGGCTTATGAGAAAGACAGCAGTGTGGGGT GGCTGTGTGTTGTGGTTGCCATGTCAAGTGCAGCAACAATTTACCAGTTGTATTGGGACTTTGTAAAAGACTGGGGGTTGCTCCAGATGGATTCGAAGAA TCCGTGGCTAAGGAACGAGTTAATGCTGCGCCAAAAGTTCATATACTACTTCTCCATGGGATTAAACCTTGTTCTGAGGCTAGCTTGGTTGCAAACAGTC CTACATTCGAGCTTTGAACACGTAGATTACCGCGTGACGGGGCTGTTCTTGGCTGCTCTAGAGGTGATCAGGAGAGGTCACTGGAATTTCTATAGGTTGG AGAATGAGCATCTAAATAATGCTGGAAAGTTTAGAGCAGTGAAGACAGTGCCACTTCCATTTCATGAAGTAGATGAACAAGATTGA
AA sequence Show only first row Show all	>Lus10019155 pacid=23141757 polypeptide=Lus10019155 locus=Lus10019155.g ID=Lus10019155.BGIv1.0 annot-version=v1.0 MVKFSKQFEGQLVPEWKEAFVDYCKLKKDLKKFPNHHSSTTSPIKNGSCSRSYFVALAATVKKFSHFGNRGNNHGAIQVHKKLASSLSKGDMYETELLDQ FEDSEAAKDFFACLDLQLNKVNQFFKTKEKEFFERGDCLKKQMNILIELKTALKEQKSTNNKGSTVDQDSMDDPSFSCTISCEDSVEKEPEEEEGEENVS DESGELGGKSMRVKREDIKMRTLSGRVFSYQGKSLRLNIPLTTPLRTFSAISYLVWGDSAVSNQSSSKKCNPEGSNNRLPIHINKTKLHHAEKMIRGAFI ELYKGLGYLKTYRNLNLLAFIKILKKFDKVTGKQVLPIYLRVVESSYFNSSDKVVNLSDEVEKLFIKHFAEDDRRKAMKYLKPQQRKESHSVTFFIGLFT GCFIALLAGMFSLIFLHFFMYGCNIFMWRKTRINYSFIFELAPTKDLKYRDVFLICTTSMTVVLGIMFGHLSLMSKGYSYSHIQAIPGLLLLAFLLLLVC PFNIFYQSSRYRFLCVIRNIILSPLYKVVMLDFFMADQLCSQVPMLRNLEYVACYYITGSYKTQDYNYCIRAGHYRDLSYAVSFLPYYWRAMQCARRWFD EGETSHLVNLGKYVSAMLAAGAKVAYEKDSSVGWLCVVVAMSSAATIYQLYWDFVKDWGLLQMDSKNPWLRNELMLRQKFIYYFSMGLNLVLRLAWLQTV LHSSFEHVDYRVTGLFLAALEVIRRGHWNFYRLENEHLNNAGKFRAVKTVPLPFHEVDEQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	0	1
AT1G58360		NAT2, AAP1	NEUTRAL AMINO ACID TRANSPORTER...		Lus10033759 [exp]	1.0	0.8801
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	3.5	0.8463
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	4.5	0.8247
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037289 [exp]	4.6	0.8101
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	6.5	0.8642
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	9.9	0.7990
AT5G66440			unknown protein		Lus10023551 [exp]	11.1	0.8254
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	12.2	0.7474
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	13.5	0.7540
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	18.3	0.7964

Compare expression of checked genes

Lus10019155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.