Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15860 557 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 553 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G26120 553 / 0 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034399 [exp] 870 / 0 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10035064 [exp] 682 / 0 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 681 / 0 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10034083 [exp] 538 / 0 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 524 / 0 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10002907 [exp] 42 / 0.001 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132200 [exp] 618 / 0 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G110700 [exp] 570 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.004G104800 [exp] 555 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.009G104000 [exp] 45 / 9e-05 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 44 / 0.0002 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104100 [exp] 43 / 0.0003 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019156 pacid=23141828 polypeptide=Lus10019156 locus=Lus10019156.g ID=Lus10019156.BGIv1.0 annot-version=v1.0 ATGAACAAATTTCGCCAGGTGAAGTTTTTATCCGTCTCCCTCCGATTCTTGGCAAACAAAGACTCCCAAGACAAATCGAAATTCAAATCACTTGTTTATG CAGCCAGCGACCAGATCACCCGCCACCAGATCGGAGGTTTTCACCACCACGATACCATAATGCCGTCCTCCCAAATCCTCCCCGTCACCCACCACTACAA CAACAAATTCCCCAAATCCCCGGAGACGTCATTGCTCATCAAAGAAGATGAAAACCCGGAGGAGGAGGAGAAGGATGTAGGTCGTAATCATCACCACAAG ATGATGAACCTCGTCGTCGACGACAACCCTTCCACGCGGCTCTTGATTTCTCCGTGGTTGTCGCTCTCTGACGAGGCATCCAACAGGAAGCCTCTTCTGT CTCCAACAGCGGCGGCGAATGGGAGCCGGCAGGAGGATTCGTTGAGTCGTGAAGTGGGTCACGCCGCCGTGGAGACGTTTCTGATTACAAGATGGAGTTT GCAGCTCTTAACGTATCTTGGGGTAGGCTACAGATGGGTTATCAGATTTCTTGCTCTTGGCTGTTACTCTTTGATGCTTTTCCCTGGATTTATTCAAGTT GGATATTACTATTTCTTCTCTAATCATGTCATTAGGAGTGTAGTTTATGGGGATCAACCGAGAAATAGGCTTGATCTGTACATACCAAAGAACAGCGATG GTCCGAAGCCAGTTGTTGCTTTTGTAACTGGTGGAGCCTGGATAATCGGGTATAAAGCTTGGGGTTCTCTACTAGGATGGCAGTTATCGGAAAGAGACAT CATAGTCGCTTGCATAGATTACAGGAACTTCCCTCAGGGAACTATGGGGGACATGGTACAGGATGCCTGTCAAGGAATCTCATTTGTATTTGAAAATATA GCTGAATATGGAGGTGATCCTAATAGGATTTATTTGATGGGGCAATCAGCTGGAGCACATATAGGTGGTTGTGCGCTTGTTGAGCAGGCAATTCGAGAAG CCGTCAAACAAGAGAATGTTTCTTGGAGTGTTTCTCAGATGAAGGCTTACTTTGGTTTATCAGGAGGGTATAACTTGTTTAACCTGGTAGATTACTTCCA CAGTCGCGGTCTGTATCGATCCATATTTTTAAGCATAATGGAAGGCGAAGAGTCGTTGAAACGGTTTTCGCCTGAAGTACTTGCACAGGATCCAAGCTTG CAGAATGCAGTTTCTCTCCTGCCTCCAGTTGTTCTTTTCCATGGTACAGCAGATTATTCAATCCCCTCAGATGCCAGCACGAGTTTTGCTGAAACACTCA AGGGAGCTGGAGTAAGGGCCGAGGCAATAACATATGAAGGCAAGACTCATACAGATTTGTTTCTTCAGGATCCAATGAGAGGTGGTACAGATCAATTGTT TGAGGACTTAGTTTCGATAATACACGAGGGCGATTCGGATGCTGAAGCGAAAGACAAAGTGGCTCCTCCGAGACGACGCCTTGTTCCTGAGTTCATGCTG CAGTTGGCTCGCAAAGTCAGCCCCTTCTAG
AA sequence Show only first row Show all	>Lus10019156 pacid=23141828 polypeptide=Lus10019156 locus=Lus10019156.g ID=Lus10019156.BGIv1.0 annot-version=v1.0 MNKFRQVKFLSVSLRFLANKDSQDKSKFKSLVYAASDQITRHQIGGFHHHDTIMPSSQILPVTHHYNNKFPKSPETSLLIKEDENPEEEEKDVGRNHHHK MMNLVVDDNPSTRLLISPWLSLSDEASNRKPLLSPTAAANGSRQEDSLSREVGHAAVETFLITRWSLQLLTYLGVGYRWVIRFLALGCYSLMLFPGFIQV GYYYFFSNHVIRSVVYGDQPRNRLDLYIPKNSDGPKPVVAFVTGGAWIIGYKAWGSLLGWQLSERDIIVACIDYRNFPQGTMGDMVQDACQGISFVFENI AEYGGDPNRIYLMGQSAGAHIGGCALVEQAIREAVKQENVSWSVSQMKAYFGLSGGYNLFNLVDYFHSRGLYRSIFLSIMEGEESLKRFSPEVLAQDPSL QNAVSLLPPVVLFHGTADYSIPSDASTSFAETLKGAGVRAEAITYEGKTHTDLFLQDPMRGGTDQLFEDLVSIIHEGDSDAEAKDKVAPPRRRLVPEFML QLARKVSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10019156 [exp]	0	1
AT5G15680			ARM repeat superfamily protein...		Lus10019255 [exp]	1.4	0.7984
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	9.5	0.7578
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	10.4	0.7761
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	21.2	0.7699
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	33.9	0.7678
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	38.2	0.7813
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	55.8	0.7505
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	70.4	0.7482
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	79.2	0.7327
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	90.4	0.7298

Compare expression of checked genes

Lus10019156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.