Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13310 332 / 2e-108 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G48280 331 / 4e-108 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G24950 329 / 2e-107 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G48300 327 / 7e-107 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT1G13080 327 / 1e-106 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26280 327 / 3e-106 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26310 326 / 4e-106 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT1G11610 325 / 5e-106 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT5G25140 325 / 7e-106 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26330 324 / 2e-105 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019159 [exp] 767 / 0 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10009903 [exp] 622 / 0 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030924 [exp] 460 / 3e-158 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 459 / 1e-157 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034397 [exp] 433 / 8e-151 AT3G26230 249 / 2e-79 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Lus10040120 [exp] 439 / 6e-150 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012879 [exp] 421 / 1e-142 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10042815 [exp] 417 / 2e-141 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030708 [exp] 416 / 3e-141 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130850 [exp] 498 / 2e-173 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 493 / 3e-171 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 476 / 8e-165 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 469 / 1e-161 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 457 / 2e-157 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 454 / 7e-156 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 452 / 3e-155 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 436 / 8e-149 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 431 / 3e-147 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.015G028000 [exp] 411 / 3e-139 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019157 pacid=23141813 polypeptide=Lus10019157 locus=Lus10019157.g ID=Lus10019157.BGIv1.0 annot-version=v1.0 ATGGATTTACTTTCCCTCGTAACGTTGTATCCTTACTTCCAAAACCAAACCCTTCTAGTTTTCGCCTTCTGGTCACTTGTTTTCCTGTTTATATGTCGGA GTAAGCTAATCAAATCCCGAAATGTCACCGTCGTGACGAATCTGCCCCCAGGCCCATGGAAGCTTCCTATAATCGGAAACATGCACCAGCTCATCCACCC ACTGCCCCACCGCCGCCTCAGAGACCTCGCCGTGAAATACGGCCCGCTAATCCACCTCCAGCTGGGACAAGTGTCGACCGTCGTCATTTCTTCCTCGGAA ATCGCCAAACACGTGACCAAACTCCACGACATCAACTTCTCCAACCGCCCCCACCTCCTCGTCGCCAAAGTCTTATGCTACGGCAACATCGCCTTTTCCC CCTACGGCGACTACTGGCGCCAGCTGCGCCGGGTCTGCACCCTGGAGCTCCTCAGCTCCAGGCGGGTCGGGTCGTACCGCTCCATCCGAGAGCAAGAGAC CGCGGATTTCGTCCGCGAAATCGCATCTCGGGAGGGGTCGTTGACCAATTTGAGCAAGCTGATCGGGGCGCTGACCAATTCCATCACGGCGAGGGCGGCG TTCGGGAAGAAATGTGGCGAGCAAGAGCAGTTCTTGCGTCTTGTTAAGGAAGTTATGGAAGTTAGAAGTGGTTTCAGTCTGCCCGATATGTTCCCTTCGT CTACATGGCTTCATGTGTTCAGCTGGCTTGAGCGTAAATTGGTCAATATTCGTCGGAGATCGGATAAGATACTTGCGAAGATCATCGATGAACATAGGCA AAAAATGAGTAATGGTACGGATGGGGAAGAGGAGGATCTTGTGGATGTTCTATTGTTGGCTCAAAAAGAAGGACAAATTGAATTCCCCTGCGGCGACGGC GATACTTGTCTCAAGTCCATAATCCTGGAAATGTTTTTGGTTGGAACAGAGACTTCTTCCACCGTTGTTGAGTGGGCAATGACAGAGCTGCTTCGAGATC GAAGAGTGTACGAAAAGGCACAATCTGAAGTAAGGCAAATGTTCGCTGGAAGGGGAACGGTAACCGAAGAGAGAATCGAAGAACTAAAGTATCTGAAACT GGTAGTGAAAGAAGCATTGAGATTACACCCTCCGATAGCTTTACTCGCAAGGCAAACAACAGAGGATGTTAAGATTGAAGGGTACGATATTCCAGCCAAC ACCAAAGTTCTGGTGAACGTTTGGGCGACTGGAAGAGATCCCAAGTACTGGAAGGAACCTGAACGGTTTTGGCCTGAGAGGTTTATGGATGTTTCTTCAG ATTTCCAGGGGACTGATTTCATGTTCATGCCGTTTGGTGTTGGGAGGAGGATTTGTCCAGGCATAGCTTTCGGAATTGCGAACGTTGAGCTTCCTTTGGC TAGCTTGTTGTATCACTTTGACTGGAAAACTGGAGATGGATCGGCACTTGCAGAGTTGGACGCATCTGAATCTGCTGGCTCAGCGGTTGCAAGGAAGCAT GAACTTTGCTTGATTCCTGTTGAAACTGAAAAGAGGTTATAG
AA sequence Show only first row Show all	>Lus10019157 pacid=23141813 polypeptide=Lus10019157 locus=Lus10019157.g ID=Lus10019157.BGIv1.0 annot-version=v1.0 MDLLSLVTLYPYFQNQTLLVFAFWSLVFLFICRSKLIKSRNVTVVTNLPPGPWKLPIIGNMHQLIHPLPHRRLRDLAVKYGPLIHLQLGQVSTVVISSSE IAKHVTKLHDINFSNRPHLLVAKVLCYGNIAFSPYGDYWRQLRRVCTLELLSSRRVGSYRSIREQETADFVREIASREGSLTNLSKLIGALTNSITARAA FGKKCGEQEQFLRLVKEVMEVRSGFSLPDMFPSSTWLHVFSWLERKLVNIRRRSDKILAKIIDEHRQKMSNGTDGEEEDLVDVLLLAQKEGQIEFPCGDG DTCLKSIILEMFLVGTETSSTVVEWAMTELLRDRRVYEKAQSEVRQMFAGRGTVTEERIEELKYLKLVVKEALRLHPPIALLARQTTEDVKIEGYDIPAN TKVLVNVWATGRDPKYWKEPERFWPERFMDVSSDFQGTDFMFMPFGVGRRICPGIAFGIANVELPLASLLYHFDWKTGDGSALAELDASESAGSAVARKH ELCLIPVETEKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48300		CYP71A23	"cytochrome P450, family 71, s...		Lus10019157 [exp]	0	1
AT1G10640			Pectin lyase-like superfamily ...		Lus10013025 [exp]	4.7	0.6603
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	5.2	0.8066
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	7.3	0.8066
					Lus10010383 [exp]	9.0	0.8066
					Lus10000380 [exp]	10.4	0.8066
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	11.6	0.8054
					Lus10009632 [exp]	12.7	0.8028
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	13.0	0.7993
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	15.5	0.7881
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	18.4	0.7558

Compare expression of checked genes

Lus10019157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.