Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034398 [exp] 462 / 2e-165 ND 39 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087300 [exp] 229 / 3e-73 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019158 pacid=23141751 polypeptide=Lus10019158 locus=Lus10019158.g ID=Lus10019158.BGIv1.0 annot-version=v1.0 ATGAGCGTCACACAGTTCGCCATGGTAATAAGCATCCCTCCTTTTCGCGCCTTTTTCTCTTCCTCCGATCCTTTTTCTTTTTTCCTCACTCGAGATTCGC AGGTCGAAGAACTGGCCTTTCTGATAAAGGACAACCTTCGGTCCAAGCATCTCGTGCTCGCCATGGAAGACAACTTGGTCAAGTTTCTCCAGAACGACAC CAGCTCAGATGGGATCCTTGAGTTGGAGCCGATGGATCCATATAATCGTCTACTCTTGCATAGGCTAGCAGATATATTTGGGTATTGTCAATTTTTGGCT CCTTTCTGTCCTAACAATTTGAATTTTCAGATCATGGGCGAAGGAGAGGACCGGCACTTGATTTTGGAGAGGTGCCCTGAGACTTCCATACCAGCAATTC TTGTCAGTGACATATTGATTCAGTATGATGAGCGTCTGTGTATCTCAGTTCCGCGCCAGATTTTGAGAAGAGATGATGCCACCCCAGTGTTGGGCGCAAA ACCATCTTCACTTAGTACAATTAAGGAGAGAGAAGCTGCATATTTGGCTGCACGGGAACGTATATTTTCAGTCGATGTGGCAGAGATGAGAGAATCTGTT GAACATAGGCCACGAAATGTTCCTGCAGTAGCTCGTCGAATGATCGCTCACGCTTTAGGCCAGAAGGTTACACCACCGACCAAAGATGATGGGGAGGAGC AGTCCAATGTTTGTGATGCAGAAAACAGGGATTGTCATCCAGAAAACGAGGATGAAGGCAGATTGGGTCCCTTCTACGATTCCCAGAAAGGCAGTTCCTC ACTGCAGAGACAATTGACCAGCAACAAACATGAGTCTAGCGCAGCACCACCTGGTCAGGAAAACTCTGGCCGGTGTAGGTTAAAAAAAATGGAGTTCTCG AAAGAGGAACACTCACGAGCTGCGACGAGGATGTTTGCCAATGCACTAGGTCTGCAACCAACAAAGGGTAATTCGGCCACAAGGTGTAAGAAACAAGGGG GATAG
AA sequence Show only first row Show all	>Lus10019158 pacid=23141751 polypeptide=Lus10019158 locus=Lus10019158.g ID=Lus10019158.BGIv1.0 annot-version=v1.0 MSVTQFAMVISIPPFRAFFSSSDPFSFFLTRDSQVEELAFLIKDNLRSKHLVLAMEDNLVKFLQNDTSSDGILELEPMDPYNRLLLHRLADIFGYCQFLA PFCPNNLNFQIMGEGEDRHLILERCPETSIPAILVSDILIQYDERLCISVPRQILRRDDATPVLGAKPSSLSTIKEREAAYLAARERIFSVDVAEMRESV EHRPRNVPAVARRMIAHALGQKVTPPTKDDGEEQSNVCDAENRDCHPENEDEGRLGPFYDSQKGSSSLQRQLTSNKHESSAAPPGQENSGRCRLKKMEFS KEEHSRAATRMFANALGLQPTKGNSATRCKKQGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019158 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	2.6	0.8775
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	3.5	0.8628
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	7.9	0.8409
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	8.5	0.8570
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	11.3	0.8437
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	11.8	0.8300
AT5G46560			unknown protein		Lus10011046 [exp]	12.7	0.8363
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	12.8	0.8434
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	13.7	0.8284
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	13.8	0.8251

Compare expression of checked genes

Lus10019158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.